Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22260 286 / 2e-97 Cysteine proteinases superfamily protein (.1.2.3) AT3G02070 244 / 3e-81 Cysteine proteinases superfamily protein (.1) AT5G04250 202 / 4e-63 Cysteine proteinases superfamily protein (.1.2) AT5G03330 197 / 4e-61 Cysteine proteinases superfamily protein (.1.2) AT2G39320 91 / 5e-22 Cysteine proteinases superfamily protein (.1) AT5G67170 60 / 4e-10 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010459 [exp] 335 / 4e-117 AT3G22260 338 / 7e-119 Cysteine proteinases superfamily protein (.1.2.3) Lus10003816 [exp] 285 / 2e-97 AT3G22260 298 / 2e-103 Cysteine proteinases superfamily protein (.1.2.3) Lus10038708 [exp] 203 / 2e-63 AT5G04250 367 / 2e-126 Cysteine proteinases superfamily protein (.1.2) Lus10026525 [exp] 199 / 4e-62 AT5G03330 292 / 4e-97 Cysteine proteinases superfamily protein (.1.2) Lus10037977 [exp] 197 / 6e-61 AT5G04250 361 / 5e-124 Cysteine proteinases superfamily protein (.1.2) Lus10013813 [exp] 192 / 4e-59 AT5G03330 280 / 2e-92 Cysteine proteinases superfamily protein (.1.2) Lus10001404 [exp] 190 / 2e-58 AT5G03330 327 / 9e-111 Cysteine proteinases superfamily protein (.1.2) Lus10023019 [exp] 189 / 6e-58 AT5G03330 325 / 4e-110 Cysteine proteinases superfamily protein (.1.2) Lus10037388 [exp] 174 / 1e-52 AT5G04250 239 / 6e-77 Cysteine proteinases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G019700 [exp] 313 / 2e-108 AT3G22260 333 / 5e-117 Cysteine proteinases superfamily protein (.1.2.3) Potri.006G021700 [exp] 311 / 9e-108 AT3G22260 347 / 2e-122 Cysteine proteinases superfamily protein (.1.2.3) Potri.014G140200 [exp] 246 / 5e-82 AT3G02070 358 / 2e-127 Cysteine proteinases superfamily protein (.1) Potri.016G094700 [exp] 204 / 3e-64 AT5G03330 316 / 9e-107 Cysteine proteinases superfamily protein (.1.2) Potri.006G125900 [exp] 202 / 5e-63 AT5G03330 329 / 1e-111 Cysteine proteinases superfamily protein (.1.2) Potri.010G225400 [exp] 199 / 2e-61 AT5G04250 360 / 2e-123 Cysteine proteinases superfamily protein (.1.2) Potri.008G036700 [exp] 197 / 9e-61 AT5G04250 372 / 2e-128 Cysteine proteinases superfamily protein (.1.2) Potri.008G036900 [exp] 175 / 1e-54 AT5G04250 239 / 4e-79 Cysteine proteinases superfamily protein (.1.2) Potri.005G140500 [exp] 69 / 3e-13 AT5G67170 401 / 3e-139 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) Potri.004G196800 [exp] 45 / 3e-05 AT2G27350 458 / 3e-157 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02338 [flax] [poplar] OTU OTU-like cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10027312 pacid=23145436 polypeptide=Lus10027312 locus=Lus10027312.g ID=Lus10027312.BGIv1.0 annot-version=v1.0 ATGACTGAAAGCTATAACAATGCAAGTACAAGCTCGGCTTCGAGTTATAATAGCAGCAGTATTCCCGATACAGAGGATGATAAGGTTATTGCGAGTATCC TAGCTGAAGATGAAAAAGCTAACGCTGGCAGACAGCTTGGAAAGAGACTCTCTCACTTGGATTCTATACCTCACACTCCTCGGGTTAATGGTCAAATTCC AGATGTGAATGATGCAAGCTTTGATCATGTTCGGTTGTCTGAAAGGTTGAGGACATATGGGCTAGCGGAACTGCATATGGAGGGTGATGGGAATTGTCAG TTTCGAGCACTAGCAGACCAGCTACTTCGCAGTCCAGATTATCACAAACATGTAAGGAAGCAAGTGATCAAGCAGCTAAAGCACTCTAGAAAACTATATG AAGGTTATATCCCGATGAAGTACAGAAGATACATAAAAAGGATGAAGAAGTACGAGTTTTGGCGTGACATGTCTTTATCAGGAGAATGGGGTGATCACGT AACTTTGCAAGCTGCAGCAGATCGATTTGAAGTAAAAATCTGCTTGGTCACATCTTTCCGGGACACATGCTACATCGAGATCAGGCCCAAAGACAAAAAT CCTAGCAGAGAGATTTGGTTGAGCTTCTGGAGTGAAGTTCACTACAACTCGCTATATACAGTCGGAGGTAACGAAACAATAAACAAATCCAACAACTCAC TGAAACGTTTATCTGGCATTTTGAGACCTTTATACAATCTGAATCTGATGATATCCATTTCGTCAAACCATGTGCTGCAGATATTCCTCACCGAGTACCC AGGAAAAAGCATTGGCTCTTCTGATGTCGAATCTCGCAACCCCAAACCATAA
AA sequence Show only first row Show all	>Lus10027312 pacid=23145436 polypeptide=Lus10027312 locus=Lus10027312.g ID=Lus10027312.BGIv1.0 annot-version=v1.0 MTESYNNASTSSASSYNSSSIPDTEDDKVIASILAEDEKANAGRQLGKRLSHLDSIPHTPRVNGQIPDVNDASFDHVRLSERLRTYGLAELHMEGDGNCQ FRALADQLLRSPDYHKHVRKQVIKQLKHSRKLYEGYIPMKYRRYIKRMKKYEFWRDMSLSGEWGDHVTLQAAADRFEVKICLVTSFRDTCYIEIRPKDKN PSREIWLSFWSEVHYNSLYTVGGNETINKSNNSLKRLSGILRPLYNLNLMISISSNHVLQIFLTEYPGKSIGSSDVESRNPKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22260			Cysteine proteinases superfami...		Lus10027312 [exp]	0	1
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10032660 [exp]	1.7	0.8296
AT1G27170			transmembrane receptors;ATP bi...		Lus10020533 [exp]	6.2	0.8334
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10014715 [exp]	6.9	0.8446
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10034997 [exp]	8.7	0.8226
AT2G46060			transmembrane protein-related ...		Lus10018827 [exp]	8.8	0.7943
AT1G33811			GDSL-like Lipase/Acylhydrolase...		Lus10036046 [exp]	9.6	0.7340
AT3G09010			Protein kinase superfamily pro...		Lus10002494 [exp]	9.8	0.7890
AT5G38900			Thioredoxin superfamily protei...		Lus10005083 [exp]	11.8	0.7967
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10028347 [exp]	12.3	0.7990
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10023073 [exp]	17.9	0.7907

Compare expression of checked genes

Lus10027312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.