Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57050 660 / 0 CBL cystathionine beta-lyase (.1.2.3) AT3G01120 206 / 5e-60 AtCGS1, ATCYS1, CGS1, MTO1 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G33320 183 / 8e-53 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G64660 140 / 1e-36 ATMGL methionine gamma-lyase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039016 [exp] 900 / 0 AT3G57050 688 / 0.0 cystathionine beta-lyase (.1.2.3) Lus10030694 [exp] 213 / 9e-63 AT3G01120 702 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10005226 [exp] 202 / 1e-58 AT3G01120 741 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10000880 [exp] 135 / 9e-35 AT1G64660 639 / 0.0 methionine gamma-lyase (.1) Lus10017333 [exp] 125 / 2e-31 AT1G64660 676 / 0.0 methionine gamma-lyase (.1) Lus10001672 [exp] 119 / 2e-29 AT1G64660 546 / 0.0 methionine gamma-lyase (.1) Lus10000881 [exp] 114 / 2e-27 AT1G64660 588 / 0.0 methionine gamma-lyase (.1) Lus10033233 [exp] 99 / 6e-23 AT1G64660 377 / 8e-130 methionine gamma-lyase (.1) Lus10001671 [exp] 63 / 2e-11 AT1G64660 242 / 2e-79 methionine gamma-lyase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G038200 [exp] 717 / 0 AT3G57050 714 / 0.0 cystathionine beta-lyase (.1.2.3) Potri.017G086500 [exp] 207 / 2e-60 AT3G01120 720 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G084000 [exp] 130 / 4e-33 AT1G64660 689 / 0.0 methionine gamma-lyase (.1) Potri.003G146600 [exp] 63 / 7e-11 AT1G64660 239 / 1e-76 methionine gamma-lyase (.1) Potri.003G187032 [exp] 59 / 8e-10 AT1G64660 288 / 2e-96 methionine gamma-lyase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF01053 [flax] [poplar] Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10027313 pacid=23145369 polypeptide=Lus10027313 locus=Lus10027313.g ID=Lus10027313.BGIv1.0 annot-version=v1.0 ATGAGCAATTCCCAAGCATCCATACTTCTGCAGAAAAGCCCCTACATTACCACTCCTACGATTATCAGACCTTCACAAGCCCTTTTCTGCCGAGACTGCA TTTCACTATCTGCAGTCAGAAAGGACCAGAATTTACGACAGCGGAGTTCTAGATTAGCAGGAAACCTTCGAGTCCATTGCGTAATGGAGAAAGGGACAGA TTCGAGCAATTCCAGATTGGTTGACCCGGTGACAGAGCCTTTCAAGGATAATGATGTGAGGGAACCTGGTGTTTCCACCATGTTGATGAACTTTGAGAAC AAGTTTGATCCTTACGATGCAATGAGTGTGCCGCTTTACCAGACTGCAACATTTAAGCAGCCATCAGCAACTGAAAATGGCCCATATGATTATACCAGAA GTGGAAATCCTACTAGGGACGCTCTAGAAAGCTTGTTGGCAAAGCTAGATAAAGGGGACCGAGCGCTTTGTTTTACAAGTGGAATGGCTGCCTTGGCTGC AGTCAGTCATCTTCTTGGAGCTGGGGATGAAATTGTAGCTGGAGATGACATTTATGGTGGCTCTGATCGATTGCTGTCACAAGTGATACCTAAAAATGGA ATTGTGGTGAAACGAGTAAACATGAGTAGCTTAGATGACGTTTCATCTGCAATGGGGCCTCAGACAAAGCTTGTGTGGTTTGAAAGCCCCACAAATCCTC GTCAACAAATTTCTGATATTCGTAAAATTGCAGAGATAGCCCATGCAAATGGTGCTCTTGTTTTGGTGGATAATAGCATCATGTCTCCTGTTCTGTCACA ACCGTTAGAACTTGGGGCAGACATCGTGATGCACTCAGTCACTAAATTCATAGCTGGGCATAGCGATGTTATGGCCGGTGCACTTGTTGTCAAAGGAGAA AGCTTGGGGAAAAGATTGTACTTCTTACAAAATGCAGAAGGCACAGGGCTAGCCCCCTTTGATTGCTGGCTCTGCTTACGAGGTATCAAGACGATGGCTT TGCGTGTTCAGAAACAACAGGAGAATGCACAGAAGATAGCCGAGTTCCTCGCTTCACATCCCCGAGTTACAAGGGTTAACTATGCGGGGCTTCAAGGTCA TCCTGGCCGCGAATTGCACTATTCCCAGGCAAAGGGTGCAGGATCGGTGTTAAGCTTCTTGACAGGATCGCTTGCTCTTTCGAAGCATGTCGTCGAGACT ACCAAGTACTTCAGCGTGACAGTAAGCTTCGGAAGTGTGAAGTCGCTCATAAGCATGCCTTGCTTCATGTCACACGCGAGCATCCCAGCTGCTGTCCGGG AAGCCAGAGGTCTGACGGATGATCTGATTCGGGTTTCTGTGGGGATCGAAGATGTGGATGATCTCATTGCCGATCTAGACTTGGCACTGAAAACTGGACC TCCATAA
AA sequence Show only first row Show all	>Lus10027313 pacid=23145369 polypeptide=Lus10027313 locus=Lus10027313.g ID=Lus10027313.BGIv1.0 annot-version=v1.0 MSNSQASILLQKSPYITTPTIIRPSQALFCRDCISLSAVRKDQNLRQRSSRLAGNLRVHCVMEKGTDSSNSRLVDPVTEPFKDNDVREPGVSTMLMNFEN KFDPYDAMSVPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKGDRALCFTSGMAALAAVSHLLGAGDEIVAGDDIYGGSDRLLSQVIPKNG IVVKRVNMSSLDDVSSAMGPQTKLVWFESPTNPRQQISDIRKIAEIAHANGALVLVDNSIMSPVLSQPLELGADIVMHSVTKFIAGHSDVMAGALVVKGE SLGKRLYFLQNAEGTGLAPFDCWLCLRGIKTMALRVQKQQENAQKIAEFLASHPRVTRVNYAGLQGHPGRELHYSQAKGAGSVLSFLTGSLALSKHVVET TKYFSVTVSFGSVKSLISMPCFMSHASIPAAVREARGLTDDLIRVSVGIEDVDDLIADLDLALKTGPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57050		CBL	cystathionine beta-lyase (.1.2...		Lus10027313 [exp]	0	1
AT5G26680			5'-3' exonuclease family prote...		Lus10000270 [exp]	2.2	0.8420
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10040931 [exp]	4.2	0.8321
AT4G18470		SNI1	SUPPRESSOR OF NPR1-1, INDUCIBL...		Lus10025429 [exp]	5.3	0.8366
AT1G64350		SEH1H	Transducin/WD40 repeat-like su...		Lus10003896 [exp]	8.9	0.8195
AT3G13226			regulatory protein RecX family...		Lus10032955 [exp]	11.3	0.7929
AT3G21540			transducin family protein / WD...		Lus10023903 [exp]	11.3	0.8200
AT3G01580			Tetratricopeptide repeat (TPR)...		Lus10034497 [exp]	13.0	0.7490
AT5G04600			RNA-binding (RRM/RBD/RNP motif...		Lus10018666 [exp]	13.7	0.7924
AT1G72090			Methylthiotransferase (.1)		Lus10016926 [exp]	14.0	0.7961
AT4G32050			neurochondrin family protein (...		Lus10032403 [exp]	15.8	0.7904

Compare expression of checked genes

Lus10027313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.