Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15000 211 / 1e-71 Ribosomal L27e protein family (.1.2) AT3G22230 208 / 7e-71 Ribosomal L27e protein family (.1) AT2G32220 195 / 1e-65 Ribosomal L27e protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039017 [exp] 237 / 4e-82 AT4G15000 232 / 3e-80 Ribosomal L27e protein family (.1.2) Lus10003814 [exp] 220 / 3e-75 AT4G15000 239 / 7e-83 Ribosomal L27e protein family (.1.2) Lus10010461 [exp] 219 / 8e-75 AT4G15000 236 / 7e-82 Ribosomal L27e protein family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G019000 [exp] 213 / 9e-73 AT4G15000 209 / 5e-71 Ribosomal L27e protein family (.1.2) Potri.001G342500 [exp] 211 / 1e-71 AT4G15000 210 / 2e-71 Ribosomal L27e protein family (.1.2) Potri.006G021500 [exp] 211 / 1e-71 AT4G15000 205 / 2e-69 Ribosomal L27e protein family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01777 [flax] [poplar] Ribosomal_L27e Ribosomal L27e protein family CL0107 [flax] [poplar] KOW PF00467 [flax] [poplar] KOW KOW motif
Representative CDS sequence Show only first row Show all	>Lus10027314 pacid=23145489 polypeptide=Lus10027314 locus=Lus10027314.g ID=Lus10027314.BGIv1.0 annot-version=v1.0 ATGGTGAAGTTCTTGAAGACCCACAAGGCGGTGATCGTCCTCCAAGGCCGGTATGCTGGGAAGAAGGCGGTGATCGTAAAGAACTTCGACGACGGAGTTC GCGACCGCGCTTACGGCCACTGTTTGGTTGCAGGGATCAAGAAGTACCCGGGAAAGGTTATCAGGAAGGATTCGGCCAGGAAGACTGCCAAGAAGTCCAG AGTCAAGTGCTTCGTGAAGCTCGTGAACTACAGGCACTTAATGCCGACCAGGTACACTCTCGATGTGGACTTGAAGGACGCCGTATCCATCGAATCCCTG GCGAGCAAGGAGAAGAAGGTAGCCGCTTGCAAGGACGCCAAGGCCAAGTTCGAGGAGAGGTTCAAGACCGGAAAGAACAGGTGGTTCTTTACCAAACTCA GGTTCTAG
AA sequence Show only first row Show all	>Lus10027314 pacid=23145489 polypeptide=Lus10027314 locus=Lus10027314.g ID=Lus10027314.BGIv1.0 annot-version=v1.0 MVKFLKTHKAVIVLQGRYAGKKAVIVKNFDDGVRDRAYGHCLVAGIKKYPGKVIRKDSARKTAKKSRVKCFVKLVNYRHLMPTRYTLDVDLKDAVSIESL ASKEKKVAACKDAKAKFEERFKTGKNRWFFTKLRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15000			Ribosomal L27e protein family ...		Lus10027314 [exp]	0	1
AT2G31610			Ribosomal protein S3 family pr...		Lus10033442 [exp]	1.0	0.9206
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10019881 [exp]	2.8	0.8928
AT4G15000			Ribosomal L27e protein family ...		Lus10039017 [exp]	3.2	0.9062
AT2G03530		ATUPS2, UPS2	ARABIDOPSIS THALIANA UREIDE PE...		Lus10036911 [exp]	3.9	0.9003
AT1G30880			unknown protein		Lus10001224 [exp]	4.0	0.8670
AT1G09590			Translation protein SH3-like f...		Lus10021079 [exp]	4.9	0.8807
AT4G15000			Ribosomal L27e protein family ...		Lus10010461 [exp]	5.0	0.8907
AT3G10950			Zinc-binding ribosomal protein...		Lus10006414 [exp]	5.3	0.8720
AT1G80860		ATPLMT	ARABIDOPSIS PHOSPHOLIPID N-MET...		Lus10026087 [exp]	5.5	0.8189
AT1G34030			Ribosomal protein S13/S18 fami...		Lus10043405 [exp]	6.2	0.8539

Compare expression of checked genes

Lus10027314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.