Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78780 160 / 3e-51 pathogenesis-related family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039018 [exp] 239 / 6e-81 AT1G78780 301 / 6e-104 pathogenesis-related family protein (.1.2.3.4) Lus10035732 [exp] 162 / 8e-52 AT1G78780 249 / 2e-85 pathogenesis-related family protein (.1.2.3.4) Lus10037316 [exp] 150 / 8e-46 AT1G78780 337 / 9e-118 pathogenesis-related family protein (.1.2.3.4) Lus10018919 [exp] 118 / 1e-33 AT1G78780 239 / 1e-79 pathogenesis-related family protein (.1.2.3.4) Lus10029763 [exp] 103 / 4e-28 AT1G78780 228 / 3e-75 pathogenesis-related family protein (.1.2.3.4) Lus10042792 [exp] 97 / 1e-26 AT1G78780 115 / 1e-33 pathogenesis-related family protein (.1.2.3.4) Lus10028620 [exp] 40 / 3e-05 AT1G78780 67 / 1e-15 pathogenesis-related family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G108900 [exp] 165 / 6e-52 AT1G78780 365 / 4e-129 pathogenesis-related family protein (.1.2.3.4) Potri.001G389800 [exp] 163 / 3e-51 AT1G78780 361 / 9e-128 pathogenesis-related family protein (.1.2.3.4) Potri.001G389400 [exp] 162 / 5e-51 AT1G78780 352 / 4e-124 pathogenesis-related family protein (.1.2.3.4) Potri.005G188400 [exp] 114 / 5e-32 AT1G78780 249 / 1e-83 pathogenesis-related family protein (.1.2.3.4) Potri.005G188300 [exp] 111 / 4e-31 AT1G78780 251 / 2e-84 pathogenesis-related family protein (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027315 pacid=23145535 polypeptide=Lus10027315 locus=Lus10027315.g ID=Lus10027315.BGIv1.0 annot-version=v1.0 ATGTCAGCAGCAGAAACCCTGAAAACAGAGAGCTACAACGCATTGCTGAAGAATCACAAGCTCGAGAAACCTCTGCAGCTGTACAAAGCAGAGGATGAGA CGTTCGAGTCATCCCACGAAGCATTTGCATCGGCTTTCCCCAGAGGATTTGCTTGGGAAGTCATCTCTGTGTACTCCGGCCCGCCAGTGGTGGTGTTCAA CTTCAGACATTGGGGCCATTTCGAAGAACCTTTCAAGGAACACCCTCCCACCGGAGACACCGTCGAGATGTTCGGCGTCGGAGTCCTGAAAGTGGATGAG AAGCTCGTCGTGGAAAGAGTGGAGGTCTACTATGATCCGGCTGATCTCATCGGCGGCCTGTTCAAGGGAGGAGGAGGACCGTCGGATTCGACATCTATGC CGCCCAAAGGATCGTCGTCGTGCCCCTTCACTGCCTAG
AA sequence Show only first row Show all	>Lus10027315 pacid=23145535 polypeptide=Lus10027315 locus=Lus10027315.g ID=Lus10027315.BGIv1.0 annot-version=v1.0 MSAAETLKTESYNALLKNHKLEKPLQLYKAEDETFESSHEAFASAFPRGFAWEVISVYSGPPVVVFNFRHWGHFEEPFKEHPPTGDTVEMFGVGVLKVDE KLVVERVEVYYDPADLIGGLFKGGGGPSDSTSMPPKGSSSCPFTA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78780			pathogenesis-related family pr...		Lus10027315 [exp]	0	1
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10012515 [exp]	7.9	0.6272
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023894 [exp]	13.8	0.6782
AT5G45180			Flavin-binding monooxygenase f...		Lus10023942 [exp]	26.3	0.6321
AT1G56290			CwfJ-like family protein (.1)		Lus10008172 [exp]	26.8	0.6367
					Lus10011286 [exp]	35.2	0.6194
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10012516 [exp]	37.9	0.6310
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10028845 [exp]	50.5	0.5656
AT5G16460			Putative adipose-regulatory pr...		Lus10026836 [exp]	54.4	0.5809
AT5G48450		SKS3	SKU5 similar 3 (.1)		Lus10040424 [exp]	60.9	0.5709
AT2G33205			Serinc-domain containing serin...		Lus10011768 [exp]	74.6	0.5851

Compare expression of checked genes

Lus10027315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.