Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35540 378 / 1e-124 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G35753 171 / 2e-46 Domain of unknown function (DUF3444) (.1) AT2G05230 171 / 1e-45 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05250 171 / 1e-45 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G53150 169 / 4e-45 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G25560 161 / 2e-42 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G18740 132 / 3e-33 Domain of unknown function (DUF3444) (.1) AT3G04980 125 / 4e-30 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G18750 125 / 4e-30 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G50115 122 / 1e-29 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039019 [exp] 992 / 0 AT2G35540 380 / 7e-126 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10038816 [exp] 253 / 4e-76 AT5G53150 540 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001726 [exp] 235 / 1e-67 AT5G27240 315 / 9e-94 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10004129 [exp] 216 / 2e-60 AT5G27240 265 / 4e-82 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10012334 [exp] 175 / 8e-47 AT5G35753 414 / 3e-134 Domain of unknown function (DUF3444) (.1) Lus10006380 [exp] 170 / 4e-45 AT5G35753 420 / 2e-136 Domain of unknown function (DUF3444) (.1) Lus10014927 [exp] 157 / 7e-41 AT5G53150 535 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008983 [exp] 148 / 1e-37 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10028842 [exp] 147 / 1e-37 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G097800 [exp] 563 / 0 AT2G35540 235 / 4e-69 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G165600 [exp] 189 / 3e-52 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 186 / 1e-50 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 183 / 1e-49 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G020200 [exp] 178 / 3e-48 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 177 / 1e-47 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G221000 [exp] 176 / 1e-47 AT2G05230 696 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 176 / 2e-47 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G098800 [exp] 174 / 2e-46 AT5G53150 282 / 5e-84 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.010G018800 [exp] 159 / 2e-41 AT5G18750 446 / 3e-142 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF11926 [flax] [poplar] DUF3444 Domain of unknown function (DUF3444)
Representative CDS sequence Show only first row Show all	>Lus10027316 pacid=23145531 polypeptide=Lus10027316 locus=Lus10027316.g ID=Lus10027316.BGIv1.0 annot-version=v1.0 ATGGATACGGAAGAAGAAGAGCAGCAGCAGGAGCTAGAACAAGAAGCAACGCGACTGAAGTCAATGGCGGAGGCCGAATTCTCAGCCTCCAACCGAAAGT CAGCACTGAAGCACGCCAAGAAAGCGCACCGTCTATCCCCAAACCTCGACCGCCCATCTTCAATGCTCACCTCCCTCAAGATTCTGCGGTTTGCCAACTC CGATTTTACCGACTGGTACAGCATTCTCCAGATAGACCCTTTCTCCCACATCACAAGTATCAAAAAGCAGTACAAGAAGCTGGCCTTGCTTTTACACCCG GATAAGAACGATTTCCCCGGCTGCGAGGAGGCCTTTAAGCTCTTAGGCCAGGGATTTAGGGTTCTGTCTGATAAAATCGCGAGGAAAGAGTTTGATTCCG CTTTGAGGCTTAGGATTCAGGAGGCTAGTTATAATCAGGAGGAGGAAGACAGCTCCATCTCTGCTGCTGTGGTGGAGACGTTTTGGACGTCTTGCTCTAG GTGTAGGCTTCTGCATCAGTTTGATAGGCAGTATCTGGGGCATAATTTGGTTTGCCCTAATTGTAACAAGGGCTTCGAGGCATTTGAGGTTGAAGAAGGC AATAATGTGGATGAGGGATCTGAAGGTGACTGTGCCAATGGTGAAGAAGAAGATGGAACTAGAGAATGGGATGATGGGAGGTTGAGCATTAGGGATTTGA GGAGGAAAAGAAGCCATGACGACAAGGTTTCAGAGAGGTCTATCTCGAAGAAGACGGTAAGATTAGATGATGATGATGAAGAAGAAACAATAACATTAGC TGAATTACAGTTACGAGCTAAGCAAAAGGCCAAGGGGAAGCAAAATCAAGAAGAGATGAATAACAAAACTGTTCCGACATCGAAGAAGAGTAGAAGAACT CAGGAGACTGAGAAGAAGAAATCTGTATTCTTGCAGAAGTATATGAATGATGATGGTCCAGAGATGATGGAGGTTGAGGATTCGGACTTCTACGACTTCG ATATCGACAGAGGAGAGAAAAGCTTTAAGAAGGGGCAAGTGTGGGCTATCTACGACGATATCGATGGGATGCCACGGCATTACGGTTTGATCGACGAGGT TGTTTCGGTGAAACCCTTTGAGGTGAAGTTGAGTTGGCTTGATCTCGTCGATAATGGAGACGAGAGGTTGATTAGTTGGACAAAAATAGGATTGCATGTA TCTTGTGGGAGCTTCAAGGTTGCGAGGAAGATGACTGTCGATTCCTTGAACATCTTCTCGCATTTGCTGACATGTGAGAGGGCAGCAAGAGAAGTCTACA GAATTTATCCAAACAAAGGTTCGGTATGGGGGGTTTACAGTGAAAAGATTCCACGTTCAGGAGAAGAACCATCCTATGAGTTTGTTGTGGTTCTGAGTAA TTACAGTGATTTCCATGGACTCAGTATGGCTTACCTAGATAAGGTGGATGGGTTCAAAACTGTGTTCAAACGTAGAGAAATCGGCTTCGATGCTGTGAAA CATGTTAAGAAAGATGGCCTTGAGTTGTTTTCTCATCGAATTCCTGCAAGGAAGCTCCTCTCAACTGAAGAAATCCCTGATCTTCTGAGAGATTGCTGGG AGCTCGATCCAGCTTCTTTGCCATCGGTGTTGCTGCACATTGGTAACGGATAA
AA sequence Show only first row Show all	>Lus10027316 pacid=23145531 polypeptide=Lus10027316 locus=Lus10027316.g ID=Lus10027316.BGIv1.0 annot-version=v1.0 MDTEEEEQQQELEQEATRLKSMAEAEFSASNRKSALKHAKKAHRLSPNLDRPSSMLTSLKILRFANSDFTDWYSILQIDPFSHITSIKKQYKKLALLLHP DKNDFPGCEEAFKLLGQGFRVLSDKIARKEFDSALRLRIQEASYNQEEEDSSISAAVVETFWTSCSRCRLLHQFDRQYLGHNLVCPNCNKGFEAFEVEEG NNVDEGSEGDCANGEEEDGTREWDDGRLSIRDLRRKRSHDDKVSERSISKKTVRLDDDDEEETITLAELQLRAKQKAKGKQNQEEMNNKTVPTSKKSRRT QETEKKKSVFLQKYMNDDGPEMMEVEDSDFYDFDIDRGEKSFKKGQVWAIYDDIDGMPRHYGLIDEVVSVKPFEVKLSWLDLVDNGDERLISWTKIGLHV SCGSFKVARKMTVDSLNIFSHLLTCERAAREVYRIYPNKGSVWGVYSEKIPRSGEEPSYEFVVVLSNYSDFHGLSMAYLDKVDGFKTVFKRREIGFDAVK HVKKDGLELFSHRIPARKLLSTEEIPDLLRDCWELDPASLPSVLLHIGNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35540			DNAJ heat shock N-terminal dom...		Lus10027316 [exp]	0	1
AT5G03800		EMB166, EMB175,...	embryo defective 1899, EMBRYO ...		Lus10008637 [exp]	4.9	0.8686
AT2G03050		SOLDAT10, EMB93	SINGLET OXYGEN-LINKED DEATH AC...		Lus10030451 [exp]	5.3	0.8712
					Lus10018968 [exp]	6.1	0.8427
AT2G36350			Protein kinase superfamily pro...		Lus10035591 [exp]	7.1	0.8831
AT3G21060		RBL	RbBP5 LIKE, Transducin/WD40 re...		Lus10035969 [exp]	7.5	0.8918
AT3G59420		ACR4	crinkly4 (.1)		Lus10015956 [exp]	8.8	0.8673
AT2G37310			Pentatricopeptide repeat (PPR)...		Lus10025273 [exp]	9.5	0.8771
AT5G58480			O-Glycosyl hydrolases family 1...		Lus10042269 [exp]	11.0	0.8904
AT1G43980			Tetratricopeptide repeat (TPR)...		Lus10028647 [exp]	11.7	0.8501
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10000002 [exp]	11.8	0.8438

Compare expression of checked genes

Lus10027316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.