Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49730 140 / 8e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65820 134 / 7e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G20300 121 / 1e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G71060 118 / 2e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74900 114 / 4e-28 OTP43 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G11310 113 / 1e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22670 110 / 1e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62470 107 / 1e-25 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 107 / 2e-25 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G80550 105 / 5e-25 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039021 [exp] 618 / 0 AT3G49730 215 / 5e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011566 [exp] 129 / 7e-33 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008102 [exp] 124 / 3e-31 AT5G11310 620 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001633 [exp] 119 / 1e-29 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011459 [exp] 117 / 5e-29 AT1G20300 711 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030603 [exp] 114 / 5e-28 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013139 [exp] 113 / 2e-27 AT5G11310 598 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037533 [exp] 111 / 2e-27 AT1G20300 472 / 2e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003461 [exp] 112 / 7e-27 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G066700 [exp] 448 / 7e-156 AT1G20300 213 / 5e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G176100 [exp] 128 / 1e-32 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G245400 [exp] 119 / 7e-30 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G084000 [exp] 118 / 2e-29 AT3G22670 489 / 3e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G102700 [exp] 117 / 4e-29 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G070200 [exp] 117 / 5e-29 AT1G74900 590 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G247400 [exp] 115 / 2e-28 AT5G11310 638 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G147200 [exp] 114 / 4e-28 AT1G80550 547 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G121400 [exp] 114 / 6e-28 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G114700 [exp] 111 / 7e-27 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10027318 pacid=23145366 polypeptide=Lus10027318 locus=Lus10027318.g ID=Lus10027318.BGIv1.0 annot-version=v1.0 ATGGCAATCAGATTGCTACGGCATACTGCCACCGTTACCCGCCACAAAAACATCATCCTCTTCCTCCACCTCCGCCGCAGCTCCTCCTCCGCCGCCGAAC TTCCCACCCTTCAACCCTCCGGCGACGCCGACTTACTCTCACAAATGCTTCTACACCACCACAACCCTTTCCACGCCATGGAATCATGTCTCCAACTCCA CGGCATCTCTCTCACGCCTCCCCTCCTCCACCAAACCCTCCTCCGCCTCCACCACTCCTCCAAAATCGCCCTCTCGCTCTTCCACTGCTCCCTCTCCCTT CCTTCCGCTTCTACCGACGTCACCTCCGCCACTTACAACCTCATCATCGACATCCTCGCCAAAGTCCGTCAATTCGACGTCTGCTGGCAGCTCATCATCC AGATGAACAACGACGACGATTTCAATTCCCATTGCCGCCCTAATTTCCTCACCTTTTCAATCCTAATCCGCCGACTGATCGCCGCTGGCTTCACCCGTCA AGCCATCCGTGTTTTTGACGATATGCAGGCTTTCCTCCTGCAAGGTACCGCGGTGGACGAGACTCATTTCTGTTTCCTCCTCGACACTCTCTGCAAGTAC GGCTACGTCAAAGTAGCCGTCGAGATTTTCAACAAAAGGAAGTTCAATTTCAACCCCAATGTCAGGATGTACACTGTGCTTATATACGGGTGGTGCAAGC TTGGGAGGTTGGACATGGCGGAGAGGTTTCTGAGAGAGATGGATGAAAGGGAAATCGAGCCTAATGTCGTCACTTACAACGTCTGGTTGAATGGGATTTG CAGGAGGGCTAGATTGCAGCCGGAGTTCAAATTTGAAAAGACGATAGTTTTGGCAGAGAAGGTGTTCGACGAAATGCGTCAAAGAGGGATCGAGCCAGAT GTCACTAGTTTCTCTATCGTGCTGCATGCCTACAGCAGGGCGCATAAACCTGAACTCACTATGGAGAAGTTGAAGCTAATGAAAGACAAGGGTATTTCCC AACTGTCGCCACCTACACTTCAGTGA
AA sequence Show only first row Show all	>Lus10027318 pacid=23145366 polypeptide=Lus10027318 locus=Lus10027318.g ID=Lus10027318.BGIv1.0 annot-version=v1.0 MAIRLLRHTATVTRHKNIILFLHLRRSSSSAAELPTLQPSGDADLLSQMLLHHHNPFHAMESCLQLHGISLTPPLLHQTLLRLHHSSKIALSLFHCSLSL PSASTDVTSATYNLIIDILAKVRQFDVCWQLIIQMNNDDDFNSHCRPNFLTFSILIRRLIAAGFTRQAIRVFDDMQAFLLQGTAVDETHFCFLLDTLCKY GYVKVAVEIFNKRKFNFNPNVRMYTVLIYGWCKLGRLDMAERFLREMDEREIEPNVVTYNVWLNGICRRARLQPEFKFEKTIVLAEKVFDEMRQRGIEPD VTSFSIVLHAYSRAHKPELTMEKLKLMKDKGISQLSPPTLQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49730			Tetratricopeptide repeat (TPR)...		Lus10027318 [exp]	0	1
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Lus10018270 [exp]	1.7	0.7632
					Lus10007244 [exp]	8.9	0.7360
AT3G12350			F-box family protein (.1.2)		Lus10010606 [exp]	12.6	0.6869
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10002688 [exp]	22.6	0.6875
AT5G16620		PDE120, TIC40, ...	pigment defective embryo 120, ...		Lus10002287 [exp]	27.5	0.7022
AT3G63510			FMN-linked oxidoreductases sup...		Lus10019714 [exp]	36.3	0.6819
AT4G34135		UGT73B2	UDP-glucosyltransferase 73B2 (...		Lus10027880 [exp]	38.2	0.6780
					Lus10006920 [exp]	39.7	0.6550
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10042096 [exp]	46.8	0.6518
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10035502 [exp]	50.7	0.6417

Compare expression of checked genes

Lus10027318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.