Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21840 330 / 2e-115 UREF urease accessory protein F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039022 [exp] 449 / 2e-162 AT1G21840 342 / 1e-120 urease accessory protein F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G224400 [exp] 347 / 4e-122 AT1G21840 359 / 4e-127 urease accessory protein F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01730 [flax] [poplar] UreF UreF
Representative CDS sequence Show only first row Show all	>Lus10027319 pacid=23145386 polypeptide=Lus10027319 locus=Lus10027319.g ID=Lus10027319.BGIv1.0 annot-version=v1.0 ATGATGGAGATGGAAAAAGAATCAGCAGAGGGAGGTTCAAATCTGGACTGGAGCAAGTGGCAACTGCTCGATTCAATTCTCCCCACCGGTGGATTCGCTC ATTCTTTCGTGTTGGAAGCAGCCATTCAAGCCCGTATAGTCTCAGATCCTGACCAGCTCCAGACACATCTAATCCACGTCCTGGAGAATTCCGGAAGCTT ACTTCTCCCTTTCGTCAACTCCGCCACCACAAACCCCACCTCAGAGAACTTGAAATATCTAGACAGATTACTAGACGCGACTCTAACCAACGAAGTCAGC AGGAAAGCGTCGATCGCGCAAGGTTCAGCGCTGATGCGGATGGCTGCAGCTGTCTTCACTGAAATCCCTGATTTTAAAGCGATTAGAGACGCCTACGTGG GGACTCAGATTGTTCAGTTTCACCACGCTCCTGTGTTTGGCTTGGTATGTGGACTTCTACGGATGGATGCGGAGACTGCTCAGAGGGGTTACTTGTTTGT TACGATGAGGGATGTTGTTTCGGCTGCGACGAGGCTGAATTTGGTCGGACCTCTTGGTGCGGCCGTGTTGCAGCATAAGGTCTCGGCCGTTGCTGAGAAT GTGCTGAAGAAGAGGGGGAATCGTCAGGTGGAGGAAGCGTGCCAGACGGCTCCTTTGCTTGATACTTTGCAGGGGTGCCATAGCTATTTGTTATCTAGAC TGTTCTGCTCATGA
AA sequence Show only first row Show all	>Lus10027319 pacid=23145386 polypeptide=Lus10027319 locus=Lus10027319.g ID=Lus10027319.BGIv1.0 annot-version=v1.0 MMEMEKESAEGGSNLDWSKWQLLDSILPTGGFAHSFVLEAAIQARIVSDPDQLQTHLIHVLENSGSLLLPFVNSATTNPTSENLKYLDRLLDATLTNEVS RKASIAQGSALMRMAAAVFTEIPDFKAIRDAYVGTQIVQFHHAPVFGLVCGLLRMDAETAQRGYLFVTMRDVVSAATRLNLVGPLGAAVLQHKVSAVAEN VLKKRGNRQVEEACQTAPLLDTLQGCHSYLLSRLFCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21840		UREF	urease accessory protein F (.1...		Lus10027319 [exp]	0	1
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Lus10038108 [exp]	3.6	0.8908
AT5G49230		HRB1	HYPERSENSITIVE TO RED AND BLUE...		Lus10037819 [exp]	4.9	0.8725
AT2G45620			Nucleotidyltransferase family ...		Lus10009310 [exp]	6.9	0.8431
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10020016 [exp]	11.3	0.8547
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10030611 [exp]	18.7	0.8573
AT3G56460			GroES-like zinc-binding alcoho...		Lus10003691 [exp]	19.8	0.8381
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10036486 [exp]	20.8	0.8741
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10000451 [exp]	22.9	0.8606
AT5G67250		VFB4, SKIP2	VIER F-BOX PROTEINE 4, SKP1/AS...		Lus10019319 [exp]	23.7	0.8634
AT3G29010			Biotin/lipoate A/B protein lig...		Lus10017321 [exp]	25.9	0.8158

Compare expression of checked genes

Lus10027319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.