Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47560 529 / 0 ATTDT, ATSDAT tonoplast dicarboxylate transporter (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039023 [exp] 364 / 2e-127 AT5G47560 332 / 2e-112 tonoplast dicarboxylate transporter (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G013900 [exp] 548 / 0 AT5G47560 759 / 0.0 tonoplast dicarboxylate transporter (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0182 [flax] [poplar] IT PF00939 [flax] [poplar] Na_sulph_symp Sodium:sulfate symporter transmembrane region
Representative CDS sequence Show only first row Show all	>Lus10027321 pacid=23145550 polypeptide=Lus10027321 locus=Lus10027321.g ID=Lus10027321.BGIv1.0 annot-version=v1.0 ATGATGCCCGTGGCGACCGGGATTCTGCAGCGTCTGCCGGAATCCGGCCCAGGAAGGTCGCCGGCGGTGAGCAAGTTCTGCAGGGCGGTGGTGTTGGGGG TGATATATTCCACCGCGGTGGGAGGGATGAGCACGTTGACCGGGACAGGCGTCAACTTGATATTGGTTGGGATGTGGAAGAGTTACTTCCCGGAGGCGGA CCCCATTAGCTTCAGTACGTGGCTGTTTTTCGGAGTTCCATTCGCTTTAGTCATCTTCTTGTTCATGTGGGCCATTCTCTGCTTGTTGTACTGCCCCAAA GGCTCCGGCCCAATTCTCTCGGCTTACTTGGATAAAGCCCATCTCAAACGAGAACTTGCTCTGCTAGGTCCAATGGCATTTGCAGAGAAGATGGTTCTAA CTGTGTTTGGGACACTTATCGTCCTATGGATGACTAGAAGTATAACAGACGATATCCCTGGATGGGGAGTCCTGTTCAATGACCGTGCCGGTGACGGAAC CGTTAGTGTTTTGATGGCCACACTACTCTTCATAATCCCGAGCAACAAGAACAAAGGGGAGAAGCTAATGGACTGGGCCAAATGCAAGAAGCTGCCGTGG AACATAGTCCTCCTACTCGGTGCCGGGTTCGCCATTGCGGACGGGGTCCGTACGAGCGGGCTAGCGGACATCCTGACCGAGTCCCTCGAGTTCCTAGAAC AGGCCCCGTACTGGGCCATAGCGCCAATCGTGTGCCTGATCGGAGCCTTCATCACCGAGTTCACTTCCAACAACGCCACAACAACGTTGTTGATTCCTCT CCTAATCCAAATCGCCAAGACAATGCACGTCCATCCTCTGCTTTTCATGGTCCCGGGCGCCATTGGAGCTCAATTCGCGTTCCTGCTCCCCACAGGGACT CCTTCCAACATCGTTGGGTTCACGACCGGGCATATTGAGATCAAGGACATGATCAAAGTCGGGATCCCGCTTAAGATTACTGGCGTCGTTGTTCTGTCCA TTTTGATGCCTACTCTTGGTAAGTTGGATCGGATTAGGCATTTTTCGTAA
AA sequence Show only first row Show all	>Lus10027321 pacid=23145550 polypeptide=Lus10027321 locus=Lus10027321.g ID=Lus10027321.BGIv1.0 annot-version=v1.0 MMPVATGILQRLPESGPGRSPAVSKFCRAVVLGVIYSTAVGGMSTLTGTGVNLILVGMWKSYFPEADPISFSTWLFFGVPFALVIFLFMWAILCLLYCPK GSGPILSAYLDKAHLKRELALLGPMAFAEKMVLTVFGTLIVLWMTRSITDDIPGWGVLFNDRAGDGTVSVLMATLLFIIPSNKNKGEKLMDWAKCKKLPW NIVLLLGAGFAIADGVRTSGLADILTESLEFLEQAPYWAIAPIVCLIGAFITEFTSNNATTTLLIPLLIQIAKTMHVHPLLFMVPGAIGAQFAFLLPTGT PSNIVGFTTGHIEIKDMIKVGIPLKITGVVVLSILMPTLGKLDRIRHFS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47560		ATTDT, ATSDAT	tonoplast dicarboxylate transp...		Lus10027321 [exp]	0	1
AT4G15630			Uncharacterised protein family...		Lus10012809 [exp]	1.4	0.8993
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10002917 [exp]	2.8	0.9053
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10016312 [exp]	4.9	0.8610
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10004558 [exp]	6.3	0.8689
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10031460 [exp]	7.3	0.8545
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Lus10041720 [exp]	8.5	0.8503
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Lus10000947 [exp]	9.9	0.8384
AT5G18650			CHY-type/CTCHY-type/RING-type ...		Lus10033969 [exp]	15.5	0.8702
					Lus10041110 [exp]	17.3	0.8592
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10004559 [exp]	17.9	0.8892

Compare expression of checked genes

Lus10027321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.