Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12560 143 / 4e-41 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT4G22390 95 / 5e-23 F-box associated ubiquitination effector family protein (.1) AT3G06240 68 / 2e-13 F-box family protein (.1) AT3G07870 57 / 8e-10 F-box and associated interaction domains-containing protein (.1) AT3G23880 45 / 9e-06 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039024 [exp] 323 / 7e-111 AT4G12560 333 / 3e-111 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10032458 [exp] 82 / 1e-18 AT4G12560 120 / 1e-30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10017604 [exp] 77 / 1e-17 AT4G12560 77 / 7e-17 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10017605 [exp] 78 / 2e-17 AT4G12560 118 / 3e-30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10006403 [exp] 65 / 1e-12 AT3G07870 362 / 2e-124 F-box and associated interaction domains-containing protein (.1) Lus10012355 [exp] 64 / 3e-12 AT3G07870 393 / 2e-135 F-box and associated interaction domains-containing protein (.1) Lus10000190 [exp] 56 / 2e-09 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031478 [exp] 56 / 2e-09 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031480 [exp] 56 / 2e-09 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G012500 [exp] 223 / 1e-71 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G154700 [exp] 223 / 1e-71 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013200 [exp] 215 / 6e-69 AT4G12560 289 / 4e-94 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G035500 [exp] 112 / 2e-29 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013000 [exp] 107 / 9e-28 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G010800 [exp] 97 / 7e-24 AT4G12560 159 / 2e-44 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G199800 [exp] 89 / 6e-21 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1) Potri.016G012700 [exp] 74 / 1e-15 AT4G12560 143 / 3e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G154500 [exp] 74 / 2e-15 AT4G12560 139 / 7e-37 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.002G223000 [exp] 65 / 2e-12 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF07734 [flax] [poplar] FBA_1 F-box associated
Representative CDS sequence Show only first row Show all	>Lus10027322 pacid=23145488 polypeptide=Lus10027322 locus=Lus10027322.g ID=Lus10027322.BGIv1.0 annot-version=v1.0 ATGGTGCCTCAACGGCCTACATTGGGTTTGAAGGATTACATCGTCTCCTTTAACTTCGTCTCTGAGCAGTTTGTGGAAATCTGTCAGCCAAAATACGAAA ACAGGGATATGAGCTATGAGGTTGACGTGGGTGCTCTTGAAGGGAAGCTGTGTGCTATGTGTAACTACGACCACGTTTGCGTTGATCTGTGGGTGATGGA GGAATACGGAGTCAAGGAATCTTGGACTAGGCTTTTTTCAGTTCAGAGAATTAGGAGTACTACTGCATTTGCCTTCGTGAGACCTCTGATTTATTCCAAA GATGGTAATGAATTGCTCCTGGAAGTGAACGATGAGAGGCTTGTATGGTACGACTGGAATAATGGGAAGGCTAGAACGGTGAAGATTCGTGGTGGGCCAA AGTCATTTGGTGCAGTGATATATGTTGAAAGCCTCATTCCAATTGATGATCCTGACGAAGTTGAGCGGCAACGACGACGAAGGGAGGATGCAGCCATGGA GAAGTTAAGAGCTGAAACTAACAAATGGGATGACTTCCTATCAGTTGGATTCAAACTAAAACTGTGA
AA sequence Show only first row Show all	>Lus10027322 pacid=23145488 polypeptide=Lus10027322 locus=Lus10027322.g ID=Lus10027322.BGIv1.0 annot-version=v1.0 MVPQRPTLGLKDYIVSFNFVSEQFVEICQPKYENRDMSYEVDVGALEGKLCAMCNYDHVCVDLWVMEEYGVKESWTRLFSVQRIRSTTAFAFVRPLIYSK DGNELLLEVNDERLVWYDWNNGKARTVKIRGGPKSFGAVIYVESLIPIDDPDEVERQRRRREDAAMEKLRAETNKWDDFLSVGFKLKL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10027322 [exp]	0	1
AT5G15110			Pectate lyase family protein (...		Lus10013267 [exp]	2.0	0.7352
AT3G47570			Leucine-rich repeat protein ki...		Lus10030634 [exp]	9.1	0.7892
					Lus10038412 [exp]	11.6	0.7509
AT2G30690			Protein of unknown function, D...		Lus10033854 [exp]	14.5	0.6560
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10036590 [exp]	15.2	0.7211
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10038344 [exp]	16.6	0.7438
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10034514 [exp]	18.2	0.6803
AT1G61440			S-locus lectin protein kinase ...		Lus10038413 [exp]	18.8	0.7237
					Lus10028295 [exp]	21.6	0.7307
AT3G10520		ATGLB2, ARATHGL...	NON-SYMBIOTIC HAEMOGLOBIN 2, A...		Lus10038655 [exp]	23.4	0.6897

Compare expression of checked genes

Lus10027322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.