Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12570 72 / 5e-14 UPL5 ubiquitin protein ligase 5 (.1) AT4G05050 52 / 2e-08 UBQ11 ubiquitin 11 (.1.2.3.4) AT2G35635 52 / 5e-08 UBQ7, RUB2 RELATED TO UBIQUITIN 2, ubiquitin 7 (.1) AT4G02890 52 / 5e-08 UBQ14 Ubiquitin family protein (.1.2.3.4) AT1G31340 51 / 5e-08 NEDD8, ATRUB1, RUB1 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1) AT1G55060 52 / 6e-08 UBQ12 ubiquitin 12 (.1) AT5G03240 53 / 7e-08 UBQ3 polyubiquitin 3 (.1.2.3) AT5G20620 53 / 8e-08 UBQ4 ubiquitin 4 (.1) AT4G05320 52 / 8e-08 UBQ10 polyubiquitin 10 (.1.2.3.4.5.6) AT1G53930 51 / 8e-08 Ubiquitin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010493 [exp] 96 / 4e-22 AT4G12570 830 / 0.0 ubiquitin protein ligase 5 (.1) Lus10018367 [exp] 52 / 6e-08 AT4G05320 452 / 4e-164 polyubiquitin 10 (.1.2.3.4.5.6) Lus10008873 [exp] 50 / 1e-07 AT3G52590 261 / 5e-92 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Lus10030894 [exp] 50 / 2e-07 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10030595 [exp] 50 / 2e-07 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10023934 [exp] 44 / 8e-05 AT2G17200 565 / 0.0 ubiquitin family protein (.1) Lus10014433 [exp] 43 / 0.0002 AT2G17200 567 / 0.0 ubiquitin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G011701 [exp] 86 / 1e-18 AT4G12570 842 / 0.0 ubiquitin protein ligase 5 (.1) Potri.016G012900 [exp] 83 / 7e-18 AT4G12570 853 / 0.0 ubiquitin protein ligase 5 (.1) Potri.016G059800 [exp] 82 / 2e-17 AT4G12570 733 / 0.0 ubiquitin protein ligase 5 (.1) Potri.006G129600 [exp] 54 / 3e-08 AT5G20620 600 / 0.0 ubiquitin 4 (.1) Potri.016G077000 [exp] 50 / 4e-08 AT3G52590 194 / 1e-65 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.005G096700 [exp] 52 / 5e-08 AT1G31340 270 / 2e-94 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1) Potri.011G026600 [exp] 52 / 5e-08 AT4G05050 452 / 3e-164 ubiquitin 11 (.1.2.3.4) Potri.017G135600 [exp] 53 / 7e-08 AT4G02890 597 / 0.0 Ubiquitin family protein (.1.2.3.4) Potri.004G021500 [exp] 52 / 8e-08 AT4G02890 604 / 0.0 Ubiquitin family protein (.1.2.3.4) Potri.017G036800 [exp] 52 / 9e-08 AT4G05320 753 / 0.0 polyubiquitin 10 (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family
Representative CDS sequence Show only first row Show all	>Lus10027323 pacid=23145371 polypeptide=Lus10027323 locus=Lus10027323.g ID=Lus10027323.BGIv1.0 annot-version=v1.0 ATGCGGGAGGACCAAGACTCCCTCCTCGCCGTCAATTCCTCCTCCGTTGTTCTGCACGATTACCGGCCGCCGTTTTTGTTGGTTAAAATCGACGCCTCCC CTTCCATCACCACCACCGCCGGCGCCTCGCTTCTTCGTACTTCTTCTTTGTTGCAGTTCTTCGTGAGGACGATCTCCAAAGGCGATCACATCGTTATTCG AGCCAGTTGCGAGGAGGAGACGGTGGAATCCGTTCTGAAAAAAATCGCGGCGATCACCGGAATTCCTGCCGATGCGCAGAGGTTGATTTCCGAGGGGAAG GAGCTGCAGCCTGAACAACAGCTGGTAGCGTGTGGGATCGAGAATGATGCGACGCTTCACTTGGTTGGACATCTGCGGAGCACAAACGATCGTCACACTT GGCGTTCGGGTTCCATTTTGGTTGGCATTGACGACCCTCTATATCTATACTGCCGTAACTCTTTCACAGTGATGTACAAGGCTGGTTTGGTGGATGTTGA GCAGCATTTGAGTTTCCCCTTTGTGACCGACTTAGCTACTCGGTTGTCCAACCGACTCGGTTTCATTCTCGAGACTTCGACGACTAGTAGTGTAGGATCA TTAGAGAGTGATGTTACCTACTTGTCATCGCATATTCGACATGCTATGTTTGACGACCTATTGCCTTCAGCTGCAGAGACTCAGCAGCTTCATGTTATAT TTAAGGATTTGTTGACAAAGATGAGCGGTTGCCTTGTCAAGTTGGGTGTTGCTCAGCATCCCAGTATCTTGCCATTTTGA
AA sequence Show only first row Show all	>Lus10027323 pacid=23145371 polypeptide=Lus10027323 locus=Lus10027323.g ID=Lus10027323.BGIv1.0 annot-version=v1.0 MREDQDSLLAVNSSSVVLHDYRPPFLLVKIDASPSITTTAGASLLRTSSLLQFFVRTISKGDHIVIRASCEEETVESVLKKIAAITGIPADAQRLISEGK ELQPEQQLVACGIENDATLHLVGHLRSTNDRHTWRSGSILVGIDDPLYLYCRNSFTVMYKAGLVDVEQHLSFPFVTDLATRLSNRLGFILETSTTSSVGS LESDVTYLSSHIRHAMFDDLLPSAAETQQLHVIFKDLLTKMSGCLVKLGVAQHPSILPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10027323 [exp]	0	1
AT5G55040			DNA-binding bromodomain-contai...		Lus10043121 [exp]	3.7	0.7069
AT5G63830			HIT-type Zinc finger family pr...		Lus10003211 [exp]	34.1	0.6502
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Lus10001251 [exp]	49.8	0.6110
AT5G50230			Transducin/WD40 repeat-like su...		Lus10042076 [exp]	54.3	0.5549
AT2G02370			SNARE associated Golgi protein...		Lus10012163 [exp]	82.4	0.5562
AT5G05230			RING/U-box superfamily protein...		Lus10029029 [exp]	87.2	0.5820
AT1G67325			Ran BP2/NZF zinc finger-like s...		Lus10011357 [exp]	100.5	0.5890
AT1G51745			Tudor/PWWP/MBT superfamily pro...		Lus10006874 [exp]	101.0	0.5716
AT3G09320			DHHC-type zinc finger family p...		Lus10024377 [exp]	121.2	0.5575
AT3G19340			Protein of unknown function (D...		Lus10012584 [exp]	156.5	0.5318

Compare expression of checked genes

Lus10027323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.