Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12570 338 / 2e-108 UPL5 ubiquitin protein ligase 5 (.1) AT1G70320 107 / 1e-24 UPL2 ubiquitin-protein ligase 2 (.1) AT1G55860 107 / 1e-24 UPL1 ubiquitin-protein ligase 1 (.1.2) AT3G53090 73 / 1e-13 UPL7 ubiquitin-protein ligase 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010493 [exp] 454 / 4e-152 AT4G12570 830 / 0.0 ubiquitin protein ligase 5 (.1) Lus10003792 [exp] 330 / 5e-111 AT4G12570 409 / 3e-136 ubiquitin protein ligase 5 (.1) Lus10039026 [exp] 99 / 9e-25 AT4G12570 97 / 7e-24 ubiquitin protein ligase 5 (.1) Lus10032830 [exp] 101 / 1e-22 AT1G55860 1189 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10002605 [exp] 96 / 1e-20 AT1G55860 1128 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10032589 [exp] 93 / 7e-20 AT1G55860 4402 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10035589 [exp] 73 / 2e-13 AT3G53090 1385 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10008636 [exp] 65 / 8e-11 AT3G53090 1270 / 0.0 ubiquitin-protein ligase 7 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G011701 [exp] 434 / 5e-145 AT4G12570 842 / 0.0 ubiquitin protein ligase 5 (.1) Potri.016G012900 [exp] 417 / 2e-138 AT4G12570 853 / 0.0 ubiquitin protein ligase 5 (.1) Potri.016G059800 [exp] 358 / 1e-116 AT4G12570 733 / 0.0 ubiquitin protein ligase 5 (.1) Potri.002G110500 [exp] 102 / 6e-23 AT1G55860 1125 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.011G094100 [exp] 95 / 1e-20 AT1G55860 4187 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.001G368600 [exp] 93 / 4e-20 AT1G55860 4297 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.016G096500 [exp] 81 / 3e-16 AT3G53090 1447 / 0.0 ubiquitin-protein ligase 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0552 [flax] [poplar] Hect PF00632 [flax] [poplar] HECT HECT-domain (ubiquitin-transferase)
Representative CDS sequence Show only first row Show all	>Lus10027324 pacid=23145554 polypeptide=Lus10027324 locus=Lus10027324.g ID=Lus10027324.BGIv1.0 annot-version=v1.0 ATGTGGAGGAAGAGTTTTTTGACGGTTTTGTCACTTAGAAGGGCTTCCATTTGTTTGTTGATAGTTAAATATGTGGAAAGGTTTGAGGATCATGATCATC AGTGGCTTCTTGAGCGTAGAAATGTGTTGGAGATGGATTTCGAGACGCGGAGGCATTTGGTTATGACCATGTTTCCTGAGGTGGAAGAAGAAGACTCCAA GGAGGATATGCATGAGATGCTTATTAACAGGGTGCAGTTACTGGAGGAGTCATTTGCAAGCATAGTTAGCGCTAAACCTGAGTCATTGCACAAACCTCTA GTTATCAAGTTCAACAATGAAGAAGCTAACGGTCCTGGTGTGCTTCGAGAATGGTTTATTCTCGTAGCGCAGGCACTGTTCAACCCGAATAATGCTCTTT TTCTACAATGCCCCACTAATCAGAAAAGGTTCCATCCTAATCCAGGGTTTGCAGCATCGAAGGTGTATCCAAAGCATCTTAAGTACTTCAGATTCTCTGG TAGAATGATTGCATTAGCTTTGAGGCACAAAGTGCAAGTGGGGATAGTCCTAGATCGTGTCCTTGTATTGCAACTAGCCGACAGACTTCAAATATGTTTG GAAGACATAAGAGATGCAGACCCGATCCTGTATAGCAGCTGCAAAGAAATTCTAGCTATGGATGCTGAGTATATTGATTCTGATGCGTTAGTGCTGACGT TTGTAAGGGACATTGAGGAGTACTTGGGACCGAAGAAGGCCATAGAACTCTTCCCAGGCGGGGAAAACATCGCAGTAAATAGCAAGAACAGAAAGGGCTA TATAAACCTTGTGATTCGACAACGATTGTCACGTCTATATCTGAGCAGGTCGAACATTTCAGACGAGGCTTTGCTGATATTCTTCCGAATATTACGACTC TTTTTTAAAGGTTTGGAGTTTGAAGATCTGGATTGTATGCTGCATGGATATGAGAGTGCAATCTGTGTTGAAGTTTGGAAGGCACATACCAAACACAAAG GCTTTAAAAAGAAGAATCCTCAGATCTCCTGGTTCTGGAAGATTGTGGAGAAAATGACAGCAGAGAAAAGGAAGACGCTTCTCTTCTTCCAGACATCGGT GAAATATCTGCCGCACGAGGGTTTCAGAGGTTTAGGTAGTGAGCTGTGGATATGCGGGACTCAGGAACGACATGAACGGTTGCCTTCATCTTACACATTA TGGAAGATCGAGTCCGCCTGA
AA sequence Show only first row Show all	>Lus10027324 pacid=23145554 polypeptide=Lus10027324 locus=Lus10027324.g ID=Lus10027324.BGIv1.0 annot-version=v1.0 MWRKSFLTVLSLRRASICLLIVKYVERFEDHDHQWLLERRNVLEMDFETRRHLVMTMFPEVEEEDSKEDMHEMLINRVQLLEESFASIVSAKPESLHKPL VIKFNNEEANGPGVLREWFILVAQALFNPNNALFLQCPTNQKRFHPNPGFAASKVYPKHLKYFRFSGRMIALALRHKVQVGIVLDRVLVLQLADRLQICL EDIRDADPILYSSCKEILAMDAEYIDSDALVLTFVRDIEEYLGPKKAIELFPGGENIAVNSKNRKGYINLVIRQRLSRLYLSRSNISDEALLIFFRILRL FFKGLEFEDLDCMLHGYESAICVEVWKAHTKHKGFKKKNPQISWFWKIVEKMTAEKRKTLLFFQTSVKYLPHEGFRGLGSELWICGTQERHERLPSSYTL WKIESA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10027324 [exp]	0	1
AT5G04550			Protein of unknown function (D...		Lus10002840 [exp]	7.7	0.5876
AT2G29040			Exostosin family protein (.1)		Lus10003440 [exp]	19.2	0.5855
AT3G19920			unknown protein		Lus10010180 [exp]	21.3	0.5781
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10036890 [exp]	22.9	0.5776
AT2G35615			Eukaryotic aspartyl protease f...		Lus10035668 [exp]	33.2	0.5694
AT1G53440			Leucine-rich repeat transmembr...		Lus10030626 [exp]	42.2	0.5300
AT2G44760			Domain of unknown function (DU...		Lus10020744 [exp]	42.5	0.5419
					Lus10022857 [exp]	45.0	0.5251
AT3G15280			unknown protein		Lus10005404 [exp]	46.6	0.5622
AT1G70780			unknown protein		Lus10009131 [exp]	51.8	0.5337

Compare expression of checked genes

Lus10027324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.