Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06340 66 / 2e-14 Plant Tudor-like protein (.1) AT1G09320 61 / 3e-11 agenet domain-containing protein (.1) AT1G26540 55 / 2e-09 Agenet domain-containing protein (.1) AT3G06520 51 / 4e-08 agenet domain-containing protein (.1) AT2G47230 45 / 7e-06 ATDUF6 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) AT1G11420 43 / 4e-05 ATDUF2 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1) AT1G03300 42 / 8e-05 ATDUF1 DOMAIN OF UNKNOWN FUNCTION 724 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039027 [exp] 216 / 4e-73 AT1G06340 91 / 7e-24 Plant Tudor-like protein (.1) Lus10009266 [exp] 188 / 2e-61 AT1G06340 86 / 2e-21 Plant Tudor-like protein (.1) Lus10037805 [exp] 72 / 4e-15 AT3G06520 271 / 9e-86 agenet domain-containing protein (.1) Lus10017088 [exp] 61 / 3e-11 AT3G06520 283 / 1e-90 agenet domain-containing protein (.1) Lus10000615 [exp] 59 / 9e-11 AT1G16890 286 / 9e-95 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10000353 [exp] 59 / 1e-10 AT1G16890 313 / 3e-103 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10002437 [exp] 58 / 2e-10 AT3G62300 252 / 1e-73 DOMAIN OF UNKNOWN FUNCTION 724 7 (.1.2) Lus10031429 [exp] 58 / 2e-10 AT1G09320 131 / 2e-33 agenet domain-containing protein (.1) Lus10010903 [exp] 58 / 3e-10 AT1G09320 136 / 3e-35 agenet domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G151200 [exp] 110 / 2e-31 AT1G06340 141 / 3e-44 Plant Tudor-like protein (.1) Potri.005G011100 [exp] 68 / 5e-14 AT1G09320 264 / 3e-84 agenet domain-containing protein (.1) Potri.013G006900 [exp] 67 / 9e-14 AT1G09320 268 / 1e-85 agenet domain-containing protein (.1) Potri.009G155250 [exp] 61 / 5e-13 AT1G06340 85 / 1e-22 Plant Tudor-like protein (.1) Potri.002G192300 [exp] 59 / 9e-11 AT1G26540 201 / 3e-54 Agenet domain-containing protein (.1) Potri.014G117800 [exp] 58 / 2e-10 AT1G11420 194 / 1e-52 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1) Potri.010G149301 [exp] 49 / 3e-08 AT3G06520 71 / 1e-15 agenet domain-containing protein (.1) Potri.002G118600 [exp] 45 / 7e-06 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF05641 [flax] [poplar] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Lus10027325 pacid=23145424 polypeptide=Lus10027325 locus=Lus10027325.g ID=Lus10027325.BGIv1.0 annot-version=v1.0 ATGATGAAGAACAATCAACCGCTGTTCCGACGAGGCGACCACGTGGAAGTGTTGAGCGACGAAGTAGGGTTCCAGGGGTCCCACTGGGAAGCCATGGTCG TTCAATATCTGGGTTCGAATCAGTACAAGGTGGAGTACACTAACCTGATCACCGAAGAAGGGTCGACTGAACTGCTGACAGATACTGTGGGAGGGAAGAT GATTCGGCCTTATCCTCCGAGGATTCGGTTCGGGAAAGGTTTCAAGATGAGGGAAGTTGTGGATGTGTGGGATAAGGATGGTTGGTGGGTTGGGAGAGTG ACGGGGAGAGCACAAGAAGGGTTGATGTATTATGTTTACTTCGATCAGCCTTACGAGCAGGAGATTGCTTACCCTGTTTCGATGATCAGACCTCATCTTG ATTGGGTCGACGGGACCTGGATTCAGCACTCCGTTATTAGAAGAAGCAAGAACATGCTACTTGGTTAA
AA sequence Show only first row Show all	>Lus10027325 pacid=23145424 polypeptide=Lus10027325 locus=Lus10027325.g ID=Lus10027325.BGIv1.0 annot-version=v1.0 MMKNNQPLFRRGDHVEVLSDEVGFQGSHWEAMVVQYLGSNQYKVEYTNLITEEGSTELLTDTVGGKMIRPYPPRIRFGKGFKMREVVDVWDKDGWWVGRV TGRAQEGLMYYVYFDQPYEQEIAYPVSMIRPHLDWVDGTWIQHSVIRRSKNMLLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06340			Plant Tudor-like protein (.1)		Lus10027325 [exp]	0	1
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Lus10017984 [exp]	1.4	0.6862
AT4G38260			Protein of unknown function (D...		Lus10012254 [exp]	5.0	0.6060
AT5G42560			Abscisic acid-responsive (TB2/...		Lus10024332 [exp]	16.7	0.5968
AT1G78160		APUM7	pumilio 7 (.1)		Lus10036469 [exp]	22.2	0.6168
					Lus10002071 [exp]	55.0	0.5649
					Lus10030066 [exp]	61.8	0.5641
AT4G04790			Tetratricopeptide repeat (TPR)...		Lus10011164 [exp]	87.4	0.5261
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10027161 [exp]	91.9	0.5508
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Lus10005917 [exp]	113.9	0.5670
AT5G01580		OSH1	OAS HIGH ACCUMULATION 1, gamma...		Lus10002203 [exp]	146.6	0.5336

Compare expression of checked genes

Lus10027325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.