Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12590 398 / 4e-142 Protein of unknown function DUF106, transmembrane (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039028 [exp] 445 / 1e-160 AT4G12590 448 / 7e-162 Protein of unknown function DUF106, transmembrane (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G011500 [exp] 416 / 4e-149 AT4G12590 456 / 5e-165 Protein of unknown function DUF106, transmembrane (.1) Potri.016G013100 [exp] 415 / 6e-149 AT4G12590 464 / 2e-168 Protein of unknown function DUF106, transmembrane (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0376 [flax] [poplar] Oxa1 PF01956 [flax] [poplar] EMC3_TMCO1 Integral membrane protein EMC3/TMCO1-like
Representative CDS sequence Show only first row Show all	>Lus10027326 pacid=23145362 polypeptide=Lus10027326 locus=Lus10027326.g ID=Lus10027326.BGIv1.0 annot-version=v1.0 ATGGCGGAGGATCTAGTGCTTGACACAGCGATCAGAGATTGGGTCCTGATTCCGCTCTCCGTTGTCATGGTTCTCATCGGAGTACTCCGCTACTTTGTCT CCAAGCTCATGCGGTCCTCTTCTCAGACCCCCGACGCTAAGATCGTCAGAGAAGGGCAAGTGATTATTAGGGCTCGGAATCTGAGGGCGGCGGCTAATTT CATTCCTGCGAAGTCCTTCCGTGCTCGTCGAGCCTATTTTAGTAACGAGGAAAATGGACTGCTGTATGTTCCTAAAGGTCAAGCTCAAAACCCACAAGCT CAAATGTTCTCTGATCCAAATATGGCCATGGATATGATGAAGAAGAATCTTTCCATGATTATACCTCAGACTCTTACTTTTGCTTTTGTCAACTTTTTCT TCTCTGGATTCGTGGCAGCCAAGATACCCTTTCCACTGACTCAGAGGTTCAGGTCCATGCTTCAAAATGGGATCGACTTGAGCACTGTTGATGTTAGCTA TGTCAGTAGTCGATCATGGTATTTTCTTAATTTGTTCGGGTTAAGGGGATTTTTCAGTCTGATACTGGGTGAAGATAATGCCATGGATGATACCCAACGC ATGATGCAAATGAGTGGGTTTGGCATGGATCCTACTAAGAACTTGGGAGCGGAGAAAGATGGTCTAGACATAGTTCAGCACGAATGGGCGTTACCAAAGT TTGAGCACCGCGCAGAAGCAGTACTAAGAAAGGTTGTAAGTTGA
AA sequence Show only first row Show all	>Lus10027326 pacid=23145362 polypeptide=Lus10027326 locus=Lus10027326.g ID=Lus10027326.BGIv1.0 annot-version=v1.0 MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSSQTPDAKIVREGQVIIRARNLRAAANFIPAKSFRARRAYFSNEENGLLYVPKGQAQNPQA QMFSDPNMAMDMMKKNLSMIIPQTLTFAFVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSWYFLNLFGLRGFFSLILGEDNAMDDTQR MMQMSGFGMDPTKNLGAEKDGLDIVQHEWALPKFEHRAEAVLRKVVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12590			Protein of unknown function DU...		Lus10027326 [exp]	0	1
AT4G12590			Protein of unknown function DU...		Lus10039028 [exp]	1.0	0.9093
AT1G29850			double-stranded DNA-binding fa...		Lus10004540 [exp]	1.4	0.8938
AT1G16560			Per1-like family protein (.1.2...		Lus10031765 [exp]	2.2	0.8812
AT5G49010		EMB2812, SLD5	SYNTHETIC LETHALITY WITH DPB11...		Lus10033618 [exp]	3.3	0.8649
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Lus10020054 [exp]	3.5	0.8822
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Lus10041015 [exp]	4.5	0.8695
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028161 [exp]	4.6	0.8743
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10019638 [exp]	5.0	0.8420
AT5G49060			Heat shock protein DnaJ, N-ter...		Lus10006515 [exp]	5.1	0.8626
AT2G25310			Protein of unknown function (D...		Lus10001955 [exp]	5.2	0.8918

Compare expression of checked genes

Lus10027326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.