Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07880 298 / 4e-103 SCN1 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) AT1G62450 282 / 4e-97 Immunoglobulin E-set superfamily protein (.1) AT1G12070 267 / 2e-91 Immunoglobulin E-set superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039029 [exp] 397 / 2e-142 AT3G07880 300 / 5e-104 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10003794 [exp] 348 / 3e-123 AT3G07880 306 / 2e-106 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10010491 [exp] 311 / 1e-107 AT3G07880 274 / 9e-93 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10001732 [exp] 302 / 7e-105 AT3G07880 310 / 6e-108 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10006400 [exp] 301 / 3e-104 AT3G07880 313 / 1e-108 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10002272 [exp] 298 / 1e-103 AT3G07880 309 / 1e-107 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10012352 [exp] 297 / 8e-103 AT3G07880 308 / 6e-107 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G010500 [exp] 327 / 1e-114 AT3G07880 317 / 5e-110 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.016G013700 [exp] 324 / 3e-113 AT3G07880 314 / 5e-109 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.014G163000 [exp] 296 / 3e-102 AT3G07880 329 / 7e-115 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.002G223200 [exp] 293 / 3e-101 AT3G07880 328 / 2e-114 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.002G234600 [exp] 246 / 2e-82 AT3G07880 212 / 5e-69 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.002G259200 [exp] 184 / 1e-58 AT3G07880 184 / 4e-58 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF02115 [flax] [poplar] Rho_GDI RHO protein GDP dissociation inhibitor
Representative CDS sequence Show only first row Show all	>Lus10027327 pacid=23145441 polypeptide=Lus10027327 locus=Lus10027327.g ID=Lus10027327.BGIv1.0 annot-version=v1.0 ATGGACAAGAATGAGGAGGAAGCAAGTAAAGCTGTTCATGAACAAGATGAGGGAAAGGACAACCATGGAAAGGATCATCAGGAGGAAGATGAAGATGATG ATCATGACGAAGATAGAAAGATTGAAGTGGGTCCTCAATACACACTCAAAGAACAACTCGAGAAGGATAAGGATGATGAAAGCTTGAGGAGGTGGAAGGA GCAACTCCTTGGCGCTGTGGATATCGAGGCGGTTGGAGAAACTTTGGATCCAGAAGTGAAGATTTTGAGTTTAGCCATCAAATCTCCAGGCAGGGAAGAC ATTGTTCTTCAAATTCCTGACGGCGATCCCAAAGGTTGTTGGTTCACCTTGAAAGAAGGCTGCCGATACAGTTTACTATTCACTTTCGGCGTCAAGAATA ATATCGTATGTGGCCTAAGATACACCAACACAGTTTGGAAGACTGGAGTCAAAGTTGACAGTACAAAAGAGATGCTTGGAACTTTCAGTCCCCAGGCAGA AACATACACACATGAGCTGCCTGAAGAGACCACCCCATCTGGTATGTTTGCCAGAGGTTCATACTCTGCTAGAAGTAAGTTTGTTGATGACGACAACAAA TGTTACTTGGAGATCAACTACACCTTTGATATTCGTAAAGAATGGCTGCCAACCTAA
AA sequence Show only first row Show all	>Lus10027327 pacid=23145441 polypeptide=Lus10027327 locus=Lus10027327.g ID=Lus10027327.BGIv1.0 annot-version=v1.0 MDKNEEEASKAVHEQDEGKDNHGKDHQEEDEDDDHDEDRKIEVGPQYTLKEQLEKDKDDESLRRWKEQLLGAVDIEAVGETLDPEVKILSLAIKSPGRED IVLQIPDGDPKGCWFTLKEGCRYSLLFTFGVKNNIVCGLRYTNTVWKTGVKVDSTKEMLGTFSPQAETYTHELPEETTPSGMFARGSYSARSKFVDDDNK CYLEINYTFDIRKEWLPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10027327 [exp]	0	1
					Lus10016118 [exp]	2.0	0.9168
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Lus10041913 [exp]	2.4	0.8883
AT1G05675			UDP-Glycosyltransferase superf...		Lus10010469 [exp]	2.8	0.9168
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10004323 [exp]	4.0	0.8796
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005660 [exp]	4.5	0.8381
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10027843 [exp]	4.6	0.8081
AT5G39300		ATHEXPALPHA1.18...	EXPANSIN 25, expansin A25 (.1)		Lus10000305 [exp]	5.5	0.8225
					Lus10026491 [exp]	5.7	0.7414
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10006352 [exp]	8.0	0.8013
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10012493 [exp]	8.9	0.7048

Compare expression of checked genes

Lus10027327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.