Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20680 431 / 6e-149 MAN2, AtMAN2 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) AT4G28320 427 / 9e-148 MAN5, AtMAN5 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) AT5G01930 348 / 3e-116 MAN6, AtMAN6 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) AT5G66460 336 / 8e-112 MAN7, AtMAN7 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) AT3G10890 329 / 2e-109 Glycosyl hydrolase superfamily protein (.1) AT3G10900 315 / 8e-104 Glycosyl hydrolase superfamily protein (.1) AT1G02310 301 / 1e-98 MAN1 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1) AT3G30540 225 / 4e-70 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039032 [exp] 844 / 0 AT2G20680 433 / 8e-150 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10039833 [exp] 424 / 2e-146 AT2G20680 633 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10033687 [exp] 420 / 1e-144 AT2G20680 644 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10031650 [exp] 419 / 2e-144 AT2G20680 655 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10018598 [exp] 413 / 4e-142 AT2G20680 627 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10014184 [exp] 363 / 2e-122 AT5G01930 674 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Lus10014288 [exp] 347 / 3e-116 AT5G66460 583 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10030347 [exp] 342 / 7e-114 AT5G66460 422 / 2e-145 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10025995 [exp] 347 / 6e-113 AT5G66460 577 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G009400 [exp] 607 / 0 AT4G28320 430 / 2e-148 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) Potri.013G130400 [exp] 432 / 2e-149 AT2G20680 661 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Potri.016G138600 [exp] 355 / 1e-118 AT5G01930 683 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.006G109900 [exp] 350 / 5e-116 AT5G01930 659 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.005G120500 [exp] 345 / 2e-115 AT5G66460 588 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.005G229600 [exp] 343 / 1e-114 AT5G66460 542 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.007G022000 [exp] 338 / 1e-112 AT5G66460 573 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.002G184500 [exp] 319 / 2e-105 AT5G66460 447 / 5e-156 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.016G014801 [exp] 306 / 7e-103 AT2G20680 231 / 2e-74 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Potri.019G070200 [exp] 218 / 7e-67 AT3G10890 302 / 3e-100 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00150 [flax] [poplar] Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence Show only first row Show all	>Lus10027329 pacid=23145392 polypeptide=Lus10027329 locus=Lus10027329.g ID=Lus10027329.BGIv1.0 annot-version=v1.0 ATGGACCTCCGGGAATGGAGAGAGAGGAGGCTTTACCCACTCGTCGGCGGCCTCATCCTTCTTTTTCTCCTCTACGTCAGCTTCTTCGGCGACGATCTCG CCTTTCCTTCGGTAGTGTGGCAGCCTAAGATGGGCTTCGTCGCCACCGACACCACCCACTTCGTCATCGTCGACGGCAAGGATCGGAAATCAACGCCTCC CTACTTCTACGTGAATGGGTGGAACTCATATTGGTTGCTGCAGGAGAGCATATGGAGCTCGTCGCGTCCCAGAGTCTCCAAGGTGCTTAAAGCCGGCGCT GAATTGGGATTGACCGTTTGCAGGACTTGGGCTTTCAGCGATGGTGACGGTCCCGACGCTCTTCAGATTGCCCCTGGCGTCTTTAACGAAAGAGTCTTCA AGGGGTTGGACTATGTGATAGTAGAGGCAAGGAGGCATGGGATCAGGCTGATACTGAGTCTAGTGAACAATCTGGATGCCTTTGGTGGAAAAGATCAGTA TGTGAAATGGGGGCAACAAGCAGGGATCAATGTCTCTTCATCTGACGATTCCTTCTTTGCCAATCCAGCTATTAGAGACTACTACAAAGCCTACATCAAG AAAATTGTGACGCGGAAGAACTCTTTAAGCAGAGTGAAGTATTCCGATGAACCAGCTATATTTGCTTGGGAGCTCATGAATGAGCCTAGATGTGCATCGA GGACTTGTGCCCCTGTTCTTCAGGCGTGGATCAGCGAGATGACCTCATACCTAAAAAGCTTGGACAGAAGGCATCTAGTGACCGTTGGTCTTGAGGGATT CTACGGCCTGAAAGCAGCGAACAAGTCAGAAGTAAACCCTGGGGAATGGGCAGCATCTCTCGGGTCGGATTTCATAGAGAACTCAGCTGTTCGCGATATC GATTTCGCATCAGTACATTCCTACCCAGATAGCTGGATGCAGAACGCGGACCTAGAAACGAAGGTGAAGTACCTATCGCGTTGGGTGGATTCCCACATTA GCGACGGAGACAGCCTGCTGAAGAAACCGGTTCTCTTCACGGAGGTAGGCTCGGTCGAGAAGGAGGGAGGAAATGACAGAGACGTGTTGTTGAAGATTGT TTACGACAATATTTACGAGTCTGCTAAGAAGAAAGAAGCAGGCGGAGGGGCCTTAATATGGCAGCTGCTGGTCGAAGGAGTGGAGCAATACAGTGACCAG TTCTCCTTCGTGCCGTGGCATTATCCTACGACGGCTAAGTTGATAAAGGAGCAATCTTGTAGGTTGCTGCATAACGTTTCAGGTGAAGAAGCAGAGGGGA AGCCATTGAATGACGAAGATGTTTGCTTTGGTCTCCACTAG
AA sequence Show only first row Show all	>Lus10027329 pacid=23145392 polypeptide=Lus10027329 locus=Lus10027329.g ID=Lus10027329.BGIv1.0 annot-version=v1.0 MDLREWRERRLYPLVGGLILLFLLYVSFFGDDLAFPSVVWQPKMGFVATDTTHFVIVDGKDRKSTPPYFYVNGWNSYWLLQESIWSSSRPRVSKVLKAGA ELGLTVCRTWAFSDGDGPDALQIAPGVFNERVFKGLDYVIVEARRHGIRLILSLVNNLDAFGGKDQYVKWGQQAGINVSSSDDSFFANPAIRDYYKAYIK KIVTRKNSLSRVKYSDEPAIFAWELMNEPRCASRTCAPVLQAWISEMTSYLKSLDRRHLVTVGLEGFYGLKAANKSEVNPGEWAASLGSDFIENSAVRDI DFASVHSYPDSWMQNADLETKVKYLSRWVDSHISDGDSLLKKPVLFTEVGSVEKEGGNDRDVLLKIVYDNIYESAKKKEAGGGALIWQLLVEGVEQYSDQ FSFVPWHYPTTAKLIKEQSCRLLHNVSGEEAEGKPLNDEDVCFGLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10027329 [exp]	0	1
AT1G79230		STR1, ATRDH1, A...	ARABIDOPSIS THALIANA RHODANESE...		Lus10031177 [exp]	1.4	0.8894
AT1G59580		ATMPK2	mitogen-activated protein kina...		Lus10010637 [exp]	2.2	0.8898
AT4G08790			Nitrilase/cyanide hydratase an...		Lus10001975 [exp]	3.7	0.8548
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10001544 [exp]	3.9	0.8793
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10039032 [exp]	9.8	0.7912
AT1G12450			SNARE associated Golgi protein...		Lus10007018 [exp]	9.9	0.8438
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10030160 [exp]	11.0	0.8609
AT5G35840		PHYC	phytochrome C (.1)		Lus10006388 [exp]	14.2	0.8020
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10031104 [exp]	16.4	0.8126
AT3G51390			DHHC-type zinc finger family p...		Lus10041837 [exp]	19.7	0.8630

Compare expression of checked genes

Lus10027329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.