Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	No hit found
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027332 pacid=23145557 polypeptide=Lus10027332 locus=Lus10027332.g ID=Lus10027332.BGIv1.0 annot-version=v1.0 ATGGCCAACCAATACCTTGTGCAAGCTAGCTTCTTAGTGTACTTGGTTCTTCACTTGGGAGTCTTGCTAGTTCCTTGTCTTGCTTGCCCAGATTGCTCTT ACCCCCCTTATAGGCCACCGCCCTACCCACCGATTGAGAAACCTCCTCATGTGCCCAAACCACCCTCCAAGCCTAAGCCACCGGTTGACAAACCTCCCAA CAAGCCGAAGCCACCAGTTGAGAAGCCTCCTCAAGTACCCAAGCCACCCTACAAACCCAAACCACCGGTTAAGAAGCCTCCCCACAAGCCCAAGCCACCG GTTGAGAAGCCTCCCCAAGTGCCCAAGCCACCATACAAACCTAAGCCACCGGTTGAGAAGTCTCCCCAAGTGCCCAAGCCACCCTACAAACCTAAGCCAC CGGTTGAGAAGCCTCCCCACAAGCCCAAGCCACCGGTTGAGAAACCTCCGCACAAACCTAAGCCACCGGTTGAGAAGCCTCCTCACATACCGAAGCCGCC CTACAAGCCCAAGCCACCGGTTGAAAAACCTCCCCAAGTGCCCAAACCACCATACAAACCTGAGCCCCCGGTTGAGAAGCCTCCCCACAAGCCCAAGCCA CCGGTTGAGAAACCTCCACACAAGCCTAAGCCTCCGGTTGAGAAGCCTCCCCAATTCCCAAAGCCACCCTACAAACCTAAGCCACCGGTTGAGAAGCCTC CCCACAAGCCCAAGCCACCGGTTGAGAAACCTCCGCACAAGTCTAAGCCTCCGGTTGAGAAGCCTCCCCAATTCCCAAAGCCACCCTACAAACCTAAGCC ACCAGTTGAGAAGCCTCCGCACAAGCCTAAGCCTCCGGTTGAGAAGCCTCCCCAATTCCCAAAGCCACCCTACAAACCTAAGCCACCAGTTGAGAAGCCT CCACACAAGCCTAAGCCTCCGGTTGAGAAGCCTCCCCAATTCCCAAAGCCACCCTACAAACCTAAGCCACCAGTTGAGAAGCCTCCGCACAAGCCTAAGC CTCCGGTTGAGAGGCCTCCCCACAAGCCCAAGCCACCGGTTGAGAAACCTCCACACAAGCCTAAGCCTCCGGTTGAGAAGCCTCCCCAAGTGCCCAAGCC ACCCTACAAACCTAAGCCACCGGTTGAGAAGCCTCCTCACGTACCGAAGCCACCCTACAAACCCAAGCCACCGGTGGAGAAACCTCCGCATAAGCCTAAG CCTCCGATTGAGAAGTCTCCCCAAGTACCCAAACCACCTTACAAGCCCAAGCCACCAGTTGAAAAGCCTCCTCACGTACCCCAACCACCCTACAAGCCCG AACCACCGGTGTCATATTACCCACCACCAAATTAA
AA sequence Show only first row Show all	>Lus10027332 pacid=23145557 polypeptide=Lus10027332 locus=Lus10027332.g ID=Lus10027332.BGIv1.0 annot-version=v1.0 MANQYLVQASFLVYLVLHLGVLLVPCLACPDCSYPPYRPPPYPPIEKPPHVPKPPSKPKPPVDKPPNKPKPPVEKPPQVPKPPYKPKPPVKKPPHKPKPP VEKPPQVPKPPYKPKPPVEKSPQVPKPPYKPKPPVEKPPHKPKPPVEKPPHKPKPPVEKPPHIPKPPYKPKPPVEKPPQVPKPPYKPEPPVEKPPHKPKP PVEKPPHKPKPPVEKPPQFPKPPYKPKPPVEKPPHKPKPPVEKPPHKSKPPVEKPPQFPKPPYKPKPPVEKPPHKPKPPVEKPPQFPKPPYKPKPPVEKP PHKPKPPVEKPPQFPKPPYKPKPPVEKPPHKPKPPVERPPHKPKPPVEKPPHKPKPPVEKPPQVPKPPYKPKPPVEKPPHVPKPPYKPKPPVEKPPHKPK PPIEKSPQVPKPPYKPKPPVEKPPHVPQPPYKPEPPVSYYPPPN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10027332 [exp]	0	1
AT3G10080			RmlC-like cupins superfamily p...		Lus10020631 [exp]	8.1	0.7343
AT1G55800			Domain of unknown function (DU...		Lus10016346 [exp]	12.5	0.6892
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10017350 [exp]	13.9	0.7098
AT1G72200			RING/U-box superfamily protein...		Lus10029794 [exp]	21.3	0.6381
AT3G23750			Leucine-rich repeat protein ki...		Lus10023220 [exp]	21.7	0.6733
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10002587 [exp]	22.1	0.6897
AT1G80080		AtRLP17, TMM	TOO MANY MOUTHS, Receptor Like...		Lus10042458 [exp]	31.7	0.6847
AT3G06240			F-box family protein (.1)		Lus10014935 [exp]	32.6	0.5770
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10002516 [exp]	36.4	0.6632
AT1G17930			Aminotransferase-like, plant m...		Lus10011644 [exp]	37.3	0.6344

Compare expression of checked genes

Lus10027332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.