Plant FIBer expression Database

Lus10027333 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G20650 481 / 5e-169 mRNA capping enzyme family protein (.1.2)
AT3G52210 70 / 8e-13 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039035
[exp]
551 / 0 AT3G20650 485 / 2e-172 mRNA capping enzyme family protein (.1.2)
Lus10003803
[exp]
550 / 0 AT3G20650 581 / 0.0 mRNA capping enzyme family protein (.1.2)
Lus10010478
[exp]
538 / 0 AT3G20650 570 / 0.0 mRNA capping enzyme family protein (.1.2)
Lus10037917
[exp]
70 / 2e-12 AT3G52210 474 / 2e-165 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Lus10038644
[exp]
69 / 2e-12 AT3G52210 477 / 3e-169 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G130100
[exp]
514 / 0 AT3G20650 582 / 0.0 mRNA capping enzyme family protein (.1.2)
Potri.010G233100
[exp]
72 / 1e-13 AT3G52210 489 / 2e-174 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF03291 Pox_MCEL mRNA capping enzyme
Representative CDS sequence
>Lus10027333 pacid=23145395 polypeptide=Lus10027333 locus=Lus10027333.g ID=Lus10027333.BGIv1.0 annot-version=v1.0
ATGCTGAAGCATGATGTCTCCCGAGTCCTGATTGTACTTCTGAACTTGACACATGGAAATCATGGCCAGGATCTTCACAAAAGTTTTGAAGCTCTCGTGG
AGAAACACCGGCAATTGTTCGGTCTAAAATCTGATGGTATCTATGTTAGACCGAACAATTGCCGGTTAGTGCAGCAGAGAGTTGGATGTCTGTCTTCTCA
TGGAAGCAGTTATGCTTTAATCTTAGTTCGAGTGGAACGATTTCTTCCGAGCTTTCCGATGTCCTGCTTGAAAATCACGATTCATGAGATACTTGTTCAT
CAAAGAGGTCTAAACAAGTACCAGGTGGTTTCTCGTGTTCAGGCCGGTGACAGGATCTGCTCTGATGCGGTGAACCGGCTCCTCAGTTTCACTCGCGCTG
CTGAGTTTGTTGAAGAATTACGCTCGGGCTTCTTCGGGGATTTGGACGGTTTCTGGCCCGTCGAGTCTTCCGTATCCATCCGGTCTTCGCCGCCCCCTGG
ATACGTCGTTTCTTGTCATTCCTGTAGTTTCTCGGCTTCCGACGTGATGCTACTTGCACTATATTCCGGCGGCGTTTTCTGCTTCTCTATTTTTGGTGCC
ATGAAACGTGGATACGCAGACTCTCCTTCCAACTCTGCTGCTCCTCCTAAATCCAGATTGAAATACACTCCCCAAGGTGATGCCCACTTCTCTGAGGATT
TTGTTCAGAAAGTGGCGGACCACTACAGTGCAAGGACGAACCAGAGTTTAGAAGAGCGAGAAGCGAGTCCAATTATTCATTTGAAGAAACTCAATAACTG
GATTAAGAGCGTCTTAATTCAACTGTATGCACGTAGAGGGGATGCTGTTCTTGATCTTGCTTGTGGCAAGGGTGGAGATCTCATTAAGTGGGATAAAGCC
AAAGTGGGATATTATGTTGGCGTTGACATTGCTGAAGGCTCGATAGAAGATTGTTGCACCCGTTACAATGGTGATGCTAATCATCATCAAAATCGTAAAA
AGTTCTCATTTCCAGCTCGTCTTATATGCGGAGACTGCTATGAGTTTGCCCTACATTATTCATGGTCTACTGAGACACGTGCTCGGAGAGCCTTGGCCAA
CATCTCAGCCCTCCTACGTCCCGGGGGCACTTTAATCGGAACGATGCCAGATGCCAATGTTATCGTCAAGAAACTTAGAGAGTCTGATGGACTGTCGTTT
GGTAATAGTGTCTACTGGATTCGTTTTGATGAAGACTATTCCGAAAAGGATGCCGTAGATTGTCCTGAATGGATTGTGCCCTTTAATGTCTTCAAAGCAC
TGGCTGAAGAGTATGATTTAGAGCTAGTGTTTGTGAAGAATGCACATGAATTCGTTCACGAGTATTTAAAGAAACCAGAATACGTTGAGCTAATGCGTAG
ACTTGGTGCATTAGGGGATGTCCATGACCAGAGCACCCTAACACCAGATGAATGGGAAGTATCATACTTGTACCTAGCCTTCGTCCTTAGAAAGGTATGA
AA sequence
>Lus10027333 pacid=23145395 polypeptide=Lus10027333 locus=Lus10027333.g ID=Lus10027333.BGIv1.0 annot-version=v1.0
MLKHDVSRVLIVLLNLTHGNHGQDLHKSFEALVEKHRQLFGLKSDGIYVRPNNCRLVQQRVGCLSSHGSSYALILVRVERFLPSFPMSCLKITIHEILVH
QRGLNKYQVVSRVQAGDRICSDAVNRLLSFTRAAEFVEELRSGFFGDLDGFWPVESSVSIRSSPPPGYVVSCHSCSFSASDVMLLALYSGGVFCFSIFGA
MKRGYADSPSNSAAPPKSRLKYTPQGDAHFSEDFVQKVADHYSARTNQSLEEREASPIIHLKKLNNWIKSVLIQLYARRGDAVLDLACGKGGDLIKWDKA
KVGYYVGVDIAEGSIEDCCTRYNGDANHHQNRKKFSFPARLICGDCYEFALHYSWSTETRARRALANISALLRPGGTLIGTMPDANVIVKKLRESDGLSF
GNSVYWIRFDEDYSEKDAVDCPEWIVPFNVFKALAEEYDLELVFVKNAHEFVHEYLKKPEYVELMRRLGALGDVHDQSTLTPDEWEVSYLYLAFVLRKV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G20650 mRNA capping enzyme family pro... Lus10027333
[exp]
0 1
AT3G21480 BRCT domain-containing DNA rep... Lus10038633
[exp]
4.5 0.8777
AT5G61460 SMC6B, ATRAD18,... STRUCTURAL MAINTENANCE OF CHRO... Lus10027219
[exp]
4.9 0.8542
AT5G39940 FAD/NAD(P)-binding oxidoreduct... Lus10001121
[exp]
5.3 0.8424
AT4G29540 AtLpxA bacterial transferase hexapept... Lus10032684
[exp]
7.5 0.8237
AT4G00490 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2... Lus10030392
[exp]
7.5 0.8136
AT2G26200 S-adenosyl-L-methionine-depend... Lus10024993
[exp]
8.5 0.8529
AT1G02145 EBS4, ALG12 EMS-MUTAGENIZED BRI1\(BRASSINO... Lus10019399
[exp]
8.9 0.8350
AT5G27540 MIRO1, EMB2473 embryo defective 2473, MIRO-re... Lus10031508
[exp]
11.0 0.7794
AT3G55850 LAF3 ISF2, LAF3... LAF3 ISOFORM 2, LONG AFTER FAR... Lus10002745
[exp]
12.0 0.8153
AT2G04860 Tetratricopeptide repeat (TPR)... Lus10032904
[exp]
15.3 0.7996

Lus10027333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.