Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07260 229 / 5e-73 UGT71C3 UDP-glucosyl transferase 71C3 (.1) AT3G21760 225 / 2e-71 HYR1 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) AT2G29740 224 / 3e-71 UGT71C2 UDP-glucosyl transferase 71C2 (.1) AT4G15260 221 / 3e-71 UDP-Glycosyltransferase superfamily protein (.1) AT3G21790 219 / 6e-69 UDP-Glycosyltransferase superfamily protein (.1) AT1G07250 218 / 1e-68 UGT71C4 UDP-glucosyl transferase 71C4 (.1) AT2G29730 217 / 2e-68 UGT71D1 UDP-glucosyl transferase 71D1 (.1) AT4G15280 215 / 1e-67 UGT71B5 UDP-glucosyl transferase 71B5 (.1) AT3G21750 212 / 2e-66 UGT71B1 UDP-glucosyl transferase 71B1 (.1) AT3G21800 211 / 4e-66 UGT71B8 UDP-glucosyl transferase 71B8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039037 [exp] 388 / 6e-135 AT1G07250 378 / 8e-127 UDP-glucosyl transferase 71C4 (.1) Lus10026795 [exp] 239 / 6e-77 AT3G21750 448 / 5e-155 UDP-glucosyl transferase 71B1 (.1) Lus10036087 [exp] 239 / 8e-77 AT3G21790 455 / 3e-157 UDP-Glycosyltransferase superfamily protein (.1) Lus10003805 [exp] 226 / 9e-72 AT1G07250 332 / 5e-109 UDP-glucosyl transferase 71C4 (.1) Lus10026793 [exp] 224 / 6e-71 AT3G21780 407 / 4e-138 UDP-glucosyl transferase 71B6 (.1) Lus10010476 [exp] 223 / 2e-70 AT1G07250 342 / 7e-113 UDP-glucosyl transferase 71C4 (.1) Lus10036086 [exp] 219 / 4e-69 AT3G21760 431 / 2e-147 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10036088 [exp] 214 / 8e-67 AT3G21760 377 / 3e-126 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10039301 [exp] 188 / 3e-57 AT3G16520 481 / 9e-168 UDP-glucosyl transferase 88A1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G015800 [exp] 263 / 1e-86 AT1G07250 395 / 3e-134 UDP-glucosyl transferase 71C4 (.1) Potri.016G015700 [exp] 262 / 8e-86 AT3G21760 354 / 6e-118 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016000 [exp] 252 / 6e-82 AT3G21750 456 / 6e-158 UDP-glucosyl transferase 71B1 (.1) Potri.016G016300 [exp] 248 / 2e-80 AT3G21790 425 / 4e-145 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016100 [exp] 248 / 2e-80 AT3G21790 431 / 1e-147 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G007300 [exp] 246 / 1e-79 AT3G21790 427 / 4e-146 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G017166 [exp] 239 / 2e-78 AT3G21760 426 / 6e-148 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G017232 [exp] 242 / 5e-78 AT3G21760 500 / 7e-175 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016500 [exp] 241 / 8e-78 AT3G21790 479 / 1e-166 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016700 [exp] 241 / 9e-78 AT3G21750 409 / 3e-139 UDP-glucosyl transferase 71B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10027334 pacid=23145514 polypeptide=Lus10027334 locus=Lus10027334.g ID=Lus10027334.BGIv1.0 annot-version=v1.0 ATGAAATGGCTGGACGATCAACCGGAACAGTCGGTAATCTTCCTCTGCTTTGGGAGCATGGGAACCTTCGGTGATATGCAGTTGAAGGAAATAGCGACCG GGCTGGAGAAGAGTGGCTACCGGTTCCTCTGGTCTATCCGGAAGCCGCCGTCGAAGGAAAAATTCTCTCTTCCGGCCAATTATGAAAGCTACAGGGAGAT ACTGCCACAAGGTTTCCAGGAGAGGACAGCTGGTACCGGGATGATCTGCGGATGGGCGCCGCAGGCCGAGGTGTTGGGGCATAAGGCGGTGGGAGGGTTC GTGAGTCACTGCGGGTGGAACTCGACGCTGGAGAGTGTGTGGAACGGGGTGCCGATGGTGGCATGGCCGTTGTACGCAGAGCAACAGAGCAATGCAGTGG AGTTGGTGAGGGAGTTGGCAGTGGAGTTGGTGAGAGAGTGTGGGGTAGCGGTTGAGTTGAGGTTGGATTACCGGCTTAATTTTGACGGGGATCATCAAAT TGTTGTGGCGGGGGATGAGATAGAGAAAGCAGTGAGAAGCGTGATGGAGGCGGAGAGTGCGGTGAGGAAGAAGGTGAAAGAGATGGCAGGAAACTGCAGG GCGGCTGTTGTTGACGGTGGCTCGTCGTTTGCTGCGATTGGGAGCTTTTTATCGGCGCTGTGA
AA sequence Show only first row Show all	>Lus10027334 pacid=23145514 polypeptide=Lus10027334 locus=Lus10027334.g ID=Lus10027334.BGIv1.0 annot-version=v1.0 MKWLDDQPEQSVIFLCFGSMGTFGDMQLKEIATGLEKSGYRFLWSIRKPPSKEKFSLPANYESYREILPQGFQERTAGTGMICGWAPQAEVLGHKAVGGF VSHCGWNSTLESVWNGVPMVAWPLYAEQQSNAVELVRELAVELVRECGVAVELRLDYRLNFDGDHQIVVAGDEIEKAVRSVMEAESAVRKKVKEMAGNCR AAVVDGGSSFAAIGSFLSAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07260		UGT71C3	UDP-glucosyl transferase 71C3 ...		Lus10027334 [exp]	0	1
AT1G50940		ETFALPHA	electron transfer flavoprotein...		Lus10011156 [exp]	6.5	0.8939
AT2G02980		OTP85	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10021667 [exp]	8.4	0.8835
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10035893 [exp]	8.8	0.8859
					Lus10034398 [exp]	9.8	0.9087
AT1G78070			Transducin/WD40 repeat-like su...		Lus10041102 [exp]	11.2	0.8855
AT1G75380		ATBBD1	bifunctional nuclease in basal...		Lus10024277 [exp]	11.4	0.8800
AT3G24050	GATA	GATA1	GATA transcription factor 1 (....		Lus10011762 [exp]	12.7	0.8728
AT3G58170		ATBET11, ATBS14...	ARABIDOPSIS THALIANA BET1P/SFT...		Lus10033868 [exp]	13.1	0.8919
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10013581 [exp]	13.6	0.8867
AT4G37560			Acetamidase/Formamidase family...		Lus10011528 [exp]	13.9	0.8844

Compare expression of checked genes

Lus10027334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.