Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66150 1275 / 0 TMK1 transmembrane kinase 1 (.1) AT2G01820 1030 / 0 CYCJ18 Leucine-rich repeat protein kinase family protein (.1) AT3G23750 783 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G24650 525 / 4e-172 Leucine-rich repeat protein kinase family protein (.1) AT1G52290 250 / 6e-73 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT1G70460 254 / 2e-72 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G23540 251 / 3e-71 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT4G02010 251 / 3e-71 Protein kinase superfamily protein (.1) AT1G10620 250 / 5e-71 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT1G68690 249 / 1e-70 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039038 [exp] 1732 / 0 AT1G66150 1356 / 0.0 transmembrane kinase 1 (.1) Lus10003807 [exp] 1243 / 0 AT1G66150 1221 / 0.0 transmembrane kinase 1 (.1) Lus10010472 [exp] 1141 / 0 AT1G66150 1067 / 0.0 transmembrane kinase 1 (.1) Lus10034432 [exp] 991 / 0 AT1G66150 979 / 0.0 transmembrane kinase 1 (.1) Lus10019131 [exp] 983 / 0 AT1G66150 981 / 0.0 transmembrane kinase 1 (.1) Lus10016952 [exp] 753 / 0 AT1G66150 806 / 0.0 transmembrane kinase 1 (.1) Lus10021275 [exp] 750 / 0 AT1G66150 804 / 0.0 transmembrane kinase 1 (.1) Lus10031944 [exp] 609 / 0 AT2G01820 1008 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023220 [exp] 437 / 9e-138 AT3G23750 903 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G134900 [exp] 1372 / 0 AT1G66150 1333 / 0.0 transmembrane kinase 1 (.1) Potri.004G084000 [exp] 1369 / 0 AT1G66150 730 / 0.0 transmembrane kinase 1 (.1) Potri.008G137801 [exp] 1121 / 0 AT1G66150 1101 / 0.0 transmembrane kinase 1 (.1) Potri.010G103000 [exp] 1119 / 0 AT2G01820 1050 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G217700 [exp] 752 / 0 AT1G66150 724 / 0.0 transmembrane kinase 1 (.1) Potri.006G203500 [exp] 551 / 0 AT2G01820 528 / 5e-173 Leucine-rich repeat protein kinase family protein (.1) Potri.018G141000 [exp] 547 / 6e-180 AT3G23750 650 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G073900 [exp] 541 / 2e-177 AT3G23750 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G070500 [exp] 539 / 1e-176 AT1G66150 778 / 0.0 transmembrane kinase 1 (.1) Potri.009G020400 [exp] 528 / 8e-172 AT1G66150 511 / 5e-166 transmembrane kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10027336 pacid=23145509 polypeptide=Lus10027336 locus=Lus10027336.g ID=Lus10027336.BGIv1.0 annot-version=v1.0 ATGATGAGAAAGAAGAGGTATCCCTGCAAGCTCTTCCACCTGGTTTTGTTACTATCTCTACTTTCTGTACCGGCAAGCTCCTTAACACAAGATGCCCCAG CAATGTTTGCTCTCAAGAAGTCCCTAAACCCTCCAGCCACACTCGGATGGTCCGACCCGGATCCTTGCAAATGGGACCACGTCGGCTGCTCCGACGTCGA CAACCGGGTCAGCCGCATCCAAATCGGCCACCAGCAGCTCAAAGGCACTCTCCCACCAGATCTTCAAAATCTCACCCAGCTCGAAAGGCTGGAGCTTCAA TCGAACAGCATTTCGGGTCCTCTCCCCACTCTAAGCGGACTCGGGTCACTCCAGGTCGTGATGCTAAGTGACAACCTCTTCGATTCAATCCCCGCCGAAT TCTTCCGTGGTTTATCATCTCTTCAGGCTGTGGAAATCGACAACAATCCCTTTGCCAGCTGGGAAGTCCCGGAAAGTGTGAAAGATGCTTCTTCGCTGCA GAATTTCTCTGCTAATTCCGCCAACGTTTCCGGGTCAATCCCGGGTTTTTTCTTCAATCCTGATGCTTTCCCTGGTTTGGTTATTCTTCATTTAGCGTTT AATAGCTTGGAGGGTGTTTTGCCTGATGGTGTTGCTTCCGGTGGTTCGCCGATTGAGTCCTTGTGGCTTAACGGGCAGAAGAGTCAGGGTAAGTTGACTG GGAGTGTTGACTTGTTGCACAACATGACCTCTTTGAAAGAAGTTTGGTTACATGATAATGGCTTCTCGGGTCCCTTGCCTGATTTTGGTGGGTTGACGAG CTTGGAAAAGTTGAGCTTGAGGGATAATTCGTTTACTGGACCTGTCCCGGATTCCTTGACTCGGTTGGAATCGTTAAAGGCGGTGAATTTGACTAATAAC TTGTTACAAGGGCCTGCTCCTGAGTTCAAGAGCTCGGTTGCTGTGGATATGGTGAAGGATTCCAACAGCTTCTGCTTGCCAACACCGGGACAATGCGATT CGAGGGTTAATGTATTGCTTTCGATTGTGAGACCTATGGGTTATCCTCAAAGGCTTGCTGAGAAATGGAAGGGGAATGATCCTTGTGCTGATTGGCTTGG GATTTCTTGCAGTGGTGACAACATTACTGTTGTTAATTTCCAGAAGATGGGTCTTTTGGGGACTATATCTCCAGACTTTGCTTTGCTTACTTCGTTGCAA AGATTGGTTCTTGCTGATAATAACTTGACAGGGACGATTCCAAAGGAGCTTGCTTCCTTGCCAATGCTGAAGGAAGTTGACGTTGCAAACAATCACATTT ATGGTAAAGTTCCAAGCTTTAAGAATGGAGTGGATTTGAAAACGGATGGGAACAAAGATATAGGAAAGGATGCTAGTAGTTTGTCTCCAGCTGGTTCATC GCCATCGACAGGTCAAGCAGCATCCGGTGATGGTGGTTCGGGAAGTGATGGAAATGGTGGCAAGAAGAAATCATCTTCCATGGTTGGGGTGATTGTGTTT TCAGTCATTGGTGGTGTGTTCATAATATTCCTTATTGCAGTGTTGGTCTTTTGTGTGTACCAAAGGAAACAGAAGAGGTTTACTAGAGTTCAAAGCCCCA ACGTGATGGTGGTTCATCCTCGCCATTCCGGTTCGGATAACGAGAGTGTGAAAATTACGGTTGCCGGATCTAGTGTCAATGTTGGAGCACTCAGCGAGAC TCATATGATAGGAACAACGAGCGATCATCAGCATGGCGAGATTCAGATGATTGAAGCGGGGAACATGGTGATTTCCATTCAAGTCCTGAAGAATGTTACA GATAATTTCAGTGAGAAGAACATTTTAGGTGCAGGAGGGTTTGGCGTGGTGTACAAAGGCGAGTTGCATGATGGAACGAAGATTGCTGTGAAAAGAATGG AGTCAGGAGTTATAACTGGGAAGGGAATCGGTGAGTTCAAGTCGGAAATCGCTGTGTTGACCAAAGTCAGGCACCGTCACCTTGTGGCATTGCTTGGTTA CTGCATTGATGGCAATGAAAAGCTTCTTGTTTATGAGTACATGCCGCAAGGAACACTTAGCAGCCATCTGTTCAACTGGGCTGAAGAAGGATTGAGACCA TTGGAATGGACTAGGAGGTTGACCATAGCGTTGGATGTTGCGAGGGGGGTTGAATACCTTCATGGTTTGGCACATCAAAGCTTCATACATAGAGATTTAA AGCCTTCCAACATTCTTCTTGGAGATGATATGAGAGCAAAGGTGTCGGATTTCGGTCTTGTGCGTCTTGCACCGGAGGGGAAAGGCTCCATTGAGACGAG GATTGCTGGAACTTTCGGATACTTAGCACCAGAATATGCAGTAACGGGACGAGTGACGACCAAAGTTGATGTCTTTAGCTATGGTGTGATACTAATGGAG CTAATCACCGGTAGAAAGGCTCTAGATGAGTCCCAGCCAGAGGAGAGCATGCATCTAGTAACATGGTTCAAGAGAATGTCCCTCAACAAGGACTCATTCA GAAAGGCCATTGACCCGACTCTCGACCTAACGGAGGAAACCCTCGCCAGCATCAGCACGGTAGCCGAGTTGGCAGGTCACTGCTGCGCAAGAGAGCCATA CCAAAGGCCAGACATGGGCCACGCAGTGAACGTTCTATCCTCTCTTGTGGAATTATGGAAACCGACCGACCAGAACGCAGAGGACATCTACGGGATCGAT CTAGACATGTCGTTGCCACAAGCACTAAAGAAATGGCAAGCTTATGAAGGCAGAAGCAACATGGAGTCATCGTCTTCTTCACTACTACCGAGCTTAGACA ACACTCAGACCAGCATACCTACCAGACCGTACGGGTTCGCCGAGTCATTCACGTCGGTCGATGGGAGCTGTTATTTTGTCCAATGTAAGTTGAAGGATTT GGTAGGAGAGGTGGGTAGTCCTGATGAGGAAAGGATTGGGTGTGGGAGCAAAGCTTCTTGGGGATGTGGCTGGGGATGGATTTGA
AA sequence Show only first row Show all	>Lus10027336 pacid=23145509 polypeptide=Lus10027336 locus=Lus10027336.g ID=Lus10027336.BGIv1.0 annot-version=v1.0 MMRKKRYPCKLFHLVLLLSLLSVPASSLTQDAPAMFALKKSLNPPATLGWSDPDPCKWDHVGCSDVDNRVSRIQIGHQQLKGTLPPDLQNLTQLERLELQ SNSISGPLPTLSGLGSLQVVMLSDNLFDSIPAEFFRGLSSLQAVEIDNNPFASWEVPESVKDASSLQNFSANSANVSGSIPGFFFNPDAFPGLVILHLAF NSLEGVLPDGVASGGSPIESLWLNGQKSQGKLTGSVDLLHNMTSLKEVWLHDNGFSGPLPDFGGLTSLEKLSLRDNSFTGPVPDSLTRLESLKAVNLTNN LLQGPAPEFKSSVAVDMVKDSNSFCLPTPGQCDSRVNVLLSIVRPMGYPQRLAEKWKGNDPCADWLGISCSGDNITVVNFQKMGLLGTISPDFALLTSLQ RLVLADNNLTGTIPKELASLPMLKEVDVANNHIYGKVPSFKNGVDLKTDGNKDIGKDASSLSPAGSSPSTGQAASGDGGSGSDGNGGKKKSSSMVGVIVF SVIGGVFIIFLIAVLVFCVYQRKQKRFTRVQSPNVMVVHPRHSGSDNESVKITVAGSSVNVGALSETHMIGTTSDHQHGEIQMIEAGNMVISIQVLKNVT DNFSEKNILGAGGFGVVYKGELHDGTKIAVKRMESGVITGKGIGEFKSEIAVLTKVRHRHLVALLGYCIDGNEKLLVYEYMPQGTLSSHLFNWAEEGLRP LEWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGKGSIETRIAGTFGYLAPEYAVTGRVTTKVDVFSYGVILME LITGRKALDESQPEESMHLVTWFKRMSLNKDSFRKAIDPTLDLTEETLASISTVAELAGHCCAREPYQRPDMGHAVNVLSSLVELWKPTDQNAEDIYGID LDMSLPQALKKWQAYEGRSNMESSSSSLLPSLDNTQTSIPTRPYGFAESFTSVDGSCYFVQCKLKDLVGEVGSPDEERIGCGSKASWGCGWGWI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10027336 [exp]	0	1
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10039038 [exp]	1.0	0.9262
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10002273 [exp]	2.4	0.8680
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10010307 [exp]	3.5	0.8940
AT5G28150			Plant protein of unknown funct...		Lus10001787 [exp]	7.1	0.8686
AT1G03170		FAF2	FANTASTIC FOUR 2, Protein of u...		Lus10014665 [exp]	7.9	0.8785
AT2G41640			Glycosyltransferase family 61 ...		Lus10042044 [exp]	10.4	0.8598
AT2G41640			Glycosyltransferase family 61 ...		Lus10018048 [exp]	10.4	0.8349
AT5G19770		TUA3	tubulin alpha-3 (.1)		Lus10013765 [exp]	11.3	0.8609
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10038278 [exp]	11.3	0.8368
AT3G07210			unknown protein		Lus10038194 [exp]	14.5	0.8324

Compare expression of checked genes

Lus10027336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.