Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32260 394 / 8e-138 ATCCT1 phosphorylcholine cytidylyltransferase (.1) AT4G15130 367 / 2e-127 ATCCT2 phosphorylcholine cytidylyltransferase2 (.1) AT2G38670 115 / 8e-29 PECT1 phosphorylethanolamine cytidylyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003808 [exp] 427 / 1e-150 AT2G32260 468 / 8e-167 phosphorylcholine cytidylyltransferase (.1) Lus10010471 [exp] 424 / 4e-149 AT2G32260 466 / 3e-166 phosphorylcholine cytidylyltransferase (.1) Lus10038368 [exp] 369 / 3e-128 AT2G32260 398 / 2e-140 phosphorylcholine cytidylyltransferase (.1) Lus10036229 [exp] 367 / 1e-127 AT2G32260 400 / 3e-141 phosphorylcholine cytidylyltransferase (.1) Lus10039039 [exp] 278 / 2e-93 AT2G32260 248 / 5e-82 phosphorylcholine cytidylyltransferase (.1) Lus10000195 [exp] 202 / 6e-64 AT4G15130 244 / 5e-81 phosphorylcholine cytidylyltransferase2 (.1) Lus10027604 [exp] 117 / 3e-29 AT2G38670 546 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10022942 [exp] 116 / 5e-29 AT2G38670 539 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10017147 [exp] 107 / 1e-25 AT2G38670 506 / 1e-179 phosphorylethanolamine cytidylyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G017500 [exp] 419 / 1e-147 AT2G32260 421 / 2e-148 phosphorylcholine cytidylyltransferase (.1) Potri.006G006700 [exp] 404 / 2e-141 AT2G32260 443 / 1e-157 phosphorylcholine cytidylyltransferase (.1) Potri.001G159400 [exp] 381 / 4e-133 AT2G32260 418 / 4e-148 phosphorylcholine cytidylyltransferase (.1) Potri.003G075000 [exp] 381 / 5e-133 AT2G32260 417 / 1e-147 phosphorylcholine cytidylyltransferase (.1) Potri.018G132700 [exp] 117 / 2e-29 AT2G38670 510 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.006G071000 [exp] 115 / 8e-29 AT2G38670 521 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.016G143600 [exp] 112 / 1e-27 AT2G38670 682 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.006G113900 [exp] 110 / 4e-27 AT2G38670 668 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01467 [flax] [poplar] CTP_transf_like Cytidylyltransferase-like
Representative CDS sequence Show only first row Show all	>Lus10027337 pacid=23145577 polypeptide=Lus10027337 locus=Lus10027337.g ID=Lus10027337.BGIv1.0 annot-version=v1.0 ATGGATGGCGCGCAGAACTCGAGCGGCAATATAGCTGTCTCTTCCCCGTCTCGAAACCCTCCCGATCCATCCTCAACCAACGGCGCCGGCAATTCCGATC AACCGATGCCCTCCGACAAGCCTGTACGCGTCTACGCCGACGGGATCTACGATCTCTTCCACTTCGGCCACGCTCGCTCCCTCGAGCAAGCCAAGAAATC GTTTCCAAATTCGTATCTACTCGTTGGATGTTGCAATGACGAAACTACTCACAAGTACAAGGGGAAAACTGTCATGACCGCAGCTGAGCGCTACGAATCT CTTCGCCACTGCAAGTGGGTGGATGAAGTCATTACTGATGCACCTTGGGTAATCGATCAGGAGTTTCTTGACAAACACAAGATTGATTATGTTGCTCACG ATGCCTTACCATATGCCGATGCAAGTGGAGGTGGGAATGATGTTTATGAGTTTGTGAAAAAAGTTGGGAGATTTAAAGAGACTAAAAGAACTGATGGGAT CTCGACATCTGATATCATAATGAAGATTCTTAAAGACTACAATCAGTATGTTCTCCGAAATCTGGACCGAGGATATACGAGGAAGGAACTTGGTGTAAGC TATGTAAAGGAAAAGCGACTGAGGGTCAACATGAGATTGAAGAAACTACAAGAGAAAGTGAAAGAGCAACAAGAGAAAGTTGGAGAAAGGATTCAAACGG TGGCAATGCAACGTAACGAATGGGTCTTGAATGCTGATCGATTGGTTGCTGGGTTTCTTGAGATGTTTGAGGAAGGATGCCATAAAATGGTTCTGTGTCT AGGTTCTGAACTCTCTGCTCTTTATGCCAATAACAAGACGGCTCTAGCGTCATATAGATCATGTCCAGTCCAAGCGAATTATAACCATTTTGATTGGGTC GTCATGTCGCAGGGGACAGCCATTAGAGACAGAATTCAAGAGCGATTAAAGAGCCATGAGGATGACGAGGAAGAATATTACGACGAAGACTCCGACGATG ATTATGAGTACGAGTATGAAGATAGCGAGGAAAAACTACTATGA
AA sequence Show only first row Show all	>Lus10027337 pacid=23145577 polypeptide=Lus10027337 locus=Lus10027337.g ID=Lus10027337.BGIv1.0 annot-version=v1.0 MDGAQNSSGNIAVSSPSRNPPDPSSTNGAGNSDQPMPSDKPVRVYADGIYDLFHFGHARSLEQAKKSFPNSYLLVGCCNDETTHKYKGKTVMTAAERYES LRHCKWVDEVITDAPWVIDQEFLDKHKIDYVAHDALPYADASGGGNDVYEFVKKVGRFKETKRTDGISTSDIIMKILKDYNQYVLRNLDRGYTRKELGVS YVKEKRLRVNMRLKKLQEKVKEQQEKVGERIQTVAMQRNEWVLNADRLVAGFLEMFEEGCHKMVLCLGSELSALYANNKTALASYRSCPVQANYNHFDWV VMSQGTAIRDRIQERLKSHEDDEEEYYDEDSDDDYEYEYEDSEEKLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10027337 [exp]	0	1
					Lus10022031 [exp]	1.0	0.9145
AT1G01550		BPS1	BYPASS 1, Protein of unknown f...		Lus10039581 [exp]	1.7	0.9067
AT1G64610			Transducin/WD40 repeat-like su...		Lus10017312 [exp]	2.6	0.8980
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10029882 [exp]	3.2	0.9011
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Lus10015587 [exp]	5.8	0.9114
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Lus10029901 [exp]	6.3	0.9041
AT1G48040			Protein phosphatase 2C family ...		Lus10037832 [exp]	6.8	0.8450
AT5G47070			Protein kinase superfamily pro...		Lus10001088 [exp]	6.9	0.8905
AT1G53050			Protein kinase superfamily pro...		Lus10033684 [exp]	7.7	0.8753
AT1G27770		PEA1, ACA1	PLASTID ENVELOPE ATPASE 1, aut...		Lus10007736 [exp]	7.9	0.8317

Compare expression of checked genes

Lus10027337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.