Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63010 404 / 3e-141 Transducin/WD40 repeat-like superfamily protein (.1) AT2G32950 68 / 3e-12 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G29260 50 / 7e-07 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT5G58230 49 / 2e-06 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G10580 49 / 3e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 46 / 3e-05 PRL1 pleiotropic regulatory locus 1 (.1) AT4G18900 46 / 3e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT3G16650 45 / 7e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT4G35050 44 / 8e-05 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT4G11110 45 / 9e-05 SPA2 SPA1-related 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039042 [exp] 551 / 0 AT5G63010 377 / 7e-131 Transducin/WD40 repeat-like superfamily protein (.1) Lus10029990 [exp] 67 / 5e-12 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10035332 [exp] 67 / 5e-12 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10007274 [exp] 51 / 4e-07 AT1G29260 529 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10029221 [exp] 51 / 6e-07 AT1G29260 531 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10033460 [exp] 50 / 2e-06 AT5G58230 781 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020916 [exp] 50 / 2e-06 AT5G58230 782 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10005074 [exp] 47 / 9e-06 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10015340 [exp] 47 / 1e-05 AT2G47990 594 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G000900 [exp] 495 / 2e-177 AT5G63010 425 / 1e-149 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G087300 [exp] 311 / 1e-106 AT5G63010 276 / 7e-93 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G159300 [exp] 63 / 9e-11 AT2G32950 1091 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G066600 [exp] 58 / 1e-09 AT1G29260 379 / 3e-134 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.004G057600 [exp] 58 / 2e-09 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.011G021700 [exp] 58 / 4e-09 AT2G32950 686 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G002700 [exp] 58 / 6e-09 AT2G32950 832 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G095300 [exp] 54 / 7e-08 AT2G46340 846 / 0.0 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) Potri.014G179700 [exp] 50 / 1e-06 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G216200 [exp] 49 / 2e-06 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10027338 pacid=23145368 polypeptide=Lus10027338 locus=Lus10027338.g ID=Lus10027338.BGIv1.0 annot-version=v1.0 ATGGAACTGGGAAGTTGCCACTTGGATGGCAATGCTGATGCAGTAGAGTTCTGTCCGCACGAGTCCTACCACCATGTTCTCGCGGCTGCTACTTACAACT TACAGGAAGGTGATCCGCCTACTCGATCAGGGAGCATTTCTCTCTTCGAAGTCGATCCTCAAAAGGGTCGGTTCGAGTTGTTTCACAAAGTAGAAACAAC TGGGATATTTGATATCAAGTGGAATCCGGTTGGTAGTAATGTGGATCCCCTTCTTGGCCAAGCTAATGCTGATGGATACTTGAGAATTCGCAGCCTCCGA TGCTCTTCAGATCGACCAAAAGGATGCTCCCTGAAAGAAGTCTCGGCCAAAAATATCAGCTCTGCAATGTGTCTCTGGCTGGATTGGAATCCATCCGCCA GCTTGATTTCAGTGGGGCTATCCGATGGTTCTGTCTCGGTGGTTTCAATCTCTGAATCCCAACTGGACGTGGTTCAAGAGTGGCAAGCTCACGATTTCGA GGTGTGGGCTGCTTCCTTTGACATTCACCAGCCTCATTTGGTATACACGGGGTCAGATGACTGCAAATTCAGATGCTGGGATATCCGAGATCAACCTTCC AACATGGTTTTCGAGAACTCAAAGGTCCACAAGATGGGGGTTTGCTGCATCGCGAAGAGTCCCACCGACCCAAACACATTGCTGACGGGTAGCTACGACG AGTATCTTCGTCTATGGGATGTAAGATCAATTTCGAAACCCGTGAACCAATTCTCGGTGTGCTTAGGGGGTGGAGTTTGGAGGCTTAAACACCATCCTTT TGTACCGGATGTGGTATTAGCAGCTTGTATGCACAATGGTTTCGCTATTGTTAAGATCAACGAAGGGGGAGCTGAAGTGGTTGAAACTTACGATAAACAC AGATCGCTAGCTTACGGTGCTGATTGGCAGAGAGGTGGATATTATGAAGACGGCAGTGAAAAGAGAGCTGCAGTAGCAACCTGCTCCTTTTACGACAAGC TTCTTCGAGCATGGATTCCTCAAAAGACCATTGCTTAA
AA sequence Show only first row Show all	>Lus10027338 pacid=23145368 polypeptide=Lus10027338 locus=Lus10027338.g ID=Lus10027338.BGIv1.0 annot-version=v1.0 MELGSCHLDGNADAVEFCPHESYHHVLAAATYNLQEGDPPTRSGSISLFEVDPQKGRFELFHKVETTGIFDIKWNPVGSNVDPLLGQANADGYLRIRSLR CSSDRPKGCSLKEVSAKNISSAMCLWLDWNPSASLISVGLSDGSVSVVSISESQLDVVQEWQAHDFEVWAASFDIHQPHLVYTGSDDCKFRCWDIRDQPS NMVFENSKVHKMGVCCIAKSPTDPNTLLTGSYDEYLRLWDVRSISKPVNQFSVCLGGGVWRLKHHPFVPDVVLAACMHNGFAIVKINEGGAEVVETYDKH RSLAYGADWQRGGYYEDGSEKRAAVATCSFYDKLLRAWIPQKTIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63010			Transducin/WD40 repeat-like su...		Lus10027338 [exp]	0	1
					Lus10000811 [exp]	8.4	0.7355
AT1G19400			Erythronate-4-phosphate dehydr...		Lus10026339 [exp]	14.0	0.7094
AT5G24660		LSU2	response to low sulfur 2 (.1)		Lus10032912 [exp]	16.0	0.6957
AT4G13040	AP2_ERF		Integrase-type DNA-binding sup...		Lus10022769 [exp]	16.6	0.6867
AT2G23200			Protein kinase superfamily pro...		Lus10010443 [exp]	20.9	0.6430
AT5G47710			Calcium-dependent lipid-bindin...		Lus10038745 [exp]	29.3	0.6502
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10014128 [exp]	34.0	0.6901
					Lus10016602 [exp]	37.7	0.7200
AT3G54360			zinc ion binding (.1)		Lus10024116 [exp]	52.5	0.6596
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Lus10015612 [exp]	52.6	0.6700

Compare expression of checked genes

Lus10027338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.