Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15080 741 / 0 DHHC-type zinc finger family protein (.1) AT3G22180 679 / 0 DHHC-type zinc finger family protein (.1) AT2G33640 408 / 4e-134 DHHC-type zinc finger family protein (.1) AT1G69420 285 / 1e-86 DHHC-type zinc finger family protein (.1.2) AT4G01730 189 / 2e-52 DHHC-type zinc finger family protein (.1) AT5G04270 63 / 9e-11 DHHC-type zinc finger family protein (.1) AT3G26935 64 / 2e-10 DHHC-type zinc finger family protein (.1) AT3G48760 61 / 1e-09 DHHC-type zinc finger family protein (.1) AT4G24630 59 / 4e-09 DHHC-type zinc finger family protein (.1) AT3G04970 59 / 5e-09 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039043 [exp] 1295 / 0 AT4G15080 830 / 0.0 DHHC-type zinc finger family protein (.1) Lus10016036 [exp] 471 / 1e-157 AT2G33640 585 / 0.0 DHHC-type zinc finger family protein (.1) Lus10025157 [exp] 324 / 5e-102 AT2G33640 392 / 2e-130 DHHC-type zinc finger family protein (.1) Lus10037133 [exp] 298 / 1e-92 AT1G69420 684 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10030426 [exp] 291 / 4e-90 AT1G69420 606 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10036798 [exp] 293 / 1e-89 AT1G69420 766 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10026632 [exp] 227 / 6e-66 AT1G69420 588 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10038029 [exp] 171 / 1e-45 AT4G01730 515 / 4e-180 DHHC-type zinc finger family protein (.1) Lus10009971 [exp] 148 / 4e-38 AT4G01730 432 / 5e-148 DHHC-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G018400 [exp] 859 / 0 AT4G15080 800 / 0.0 DHHC-type zinc finger family protein (.1) Potri.006G020800 [exp] 823 / 0 AT4G15080 786 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G006900 [exp] 520 / 1e-176 AT2G33640 553 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G254366 [exp] 354 / 3e-117 AT2G33640 395 / 1e-135 DHHC-type zinc finger family protein (.1) Potri.008G091700 [exp] 294 / 5e-90 AT1G69420 626 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.010G163200 [exp] 286 / 1e-86 AT1G69420 563 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.014G112000 [exp] 218 / 7e-63 AT4G01730 526 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G186800 [exp] 207 / 1e-58 AT4G01730 520 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G254432 [exp] 119 / 8e-29 AT2G33640 136 / 2e-35 DHHC-type zinc finger family protein (.1) Potri.001G070100 [exp] 66 / 5e-11 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10027339 pacid=23145567 polypeptide=Lus10027339 locus=Lus10027339.g ID=Lus10027339.BGIv1.0 annot-version=v1.0 ATGGCGAGGAAGCACGGATGGCAATTGCCAGCACACACGTTTCAGGTTGTTGCAATCACCGTCTTCTGCCTGCTAGTGATAGCATTCTATGCTTTCTTTG CCCCTTTCCTTGGAGGCCACATTTGGGAATACACTCTAATTGGCGTATACTCTCCAGTGGTCCTCCTGGTTTTTATTCTTTATGTTCGTTGTACTGCAAT TAATCCAGCGGATCCTGGCATTATGTCCAAATTCAATCCTCATATAGCACCGAACACAAATGCTAAGCACAGACAATTCGGTGAAACTGGCAGTGCAATG CATTCTTCCCCGTCTTCAATGTCCAAAAGTTCTATAGCTGCTGCCAACTCTAGCAGACAAGGATCATTTGGAGATACCGGGAGAGCTCCTGCTGAGCCCC CGGCCCAAACATCATGCTCTATTCTTGGGGGGATCTTATGTGCCGTATTTGTTCATGAAGATTGTCGCAAGCAGGAGGGGATCACTGATGAACAGGGCTC TGTTGAAGATGCATTATTCTGTACATTGTGCAATGCTGAGGTACGCAAGTTTAGCAAGCACTGCCGTAGTTGTGATAAATGTGTCGATGGATTCGATCAC CATTGTCGGTGGTTGAACAATTGTGTTGGCCATAAAAATTATGTGACTTTCATTTCCCTTATGGCTACAAGTTTTGTCTGGCTTGTACTCGAAGCTGGAG TCGGAATTGCTGTCTTGGTACGCTGCTTTGTCAATAAGAAAAGCATGAGTGCTGAAATTGTTGATACGCTTGGAAATGGTTTCTCTCGTGCTCCCTTCGC TACTGTAGTGTCTGTATGTACAGCAGTTTCAATTTTGGCCTGCATTCCCTTGGGCGAGCTCTTTTTCTTTCACATGATATTGATTAGAAAGGTTAATCCT GAAACTGGTATTACAACTTATGAGTACGTTGTGGCAATGAGAGCAATGAGTGAGGGTCCTGCATTGAACTTGGATGAGCAATTTAACAACGCGGGAAACT CCCCAACAGGATCGGCAACCACAGGATTCAGCGGTGGAAGTTCTCTTGGCCTACAGTACAAAGGAGCATGGTGTACCCCTCCCAGAATATTCGTCGATTA TCAGGATGAAGTAATACCTCACTTGGAGCCAGGAATGGTCCCTTCAACGATTGACCCGGATGCAGGTGGAGATAATGGTGAAAGAGCAAACAGGCCGGGG AAAAGGCCAGTTCGAATCAGTGCTTGGAAACTTGCTAAGTTGGATTCCAATGAAGCAATGAAGGCGGCGGCAAAGGCAAGGGCGTCTTCTTCTGTTTTAA AACCAGCTGAAGGAAGCCAACAGTTCCCCTATCTTGTTGAAGGTAGCTCAAGTGGCAATATGAGTGTCAGAAGTAGTGTTAGTGCTGAAATTGTTCCAAA TAAGGGCATCAAGAGTGATCTGCTGCGGCTGCCCTCACAAGATCATTCTGTACCTCCTAGTCTAGGTAGCCACGATGATTGCGAAGCCGGGGCTCAAAGT GTTAGTAGCTTCGACAGTCCAAGCCACATCCATGAATCAGTCACCCTTAGCCCTCTTCCACAAGGTCATAGGCTGGGTCATCCAAAAGCAGCAACCTCGG TTACTGGTTTTATTCCGTGCGGTCATCCTGTAACATCCAAGACGACTGATACCAGTGGAAACAATCCTTTGACACTTTCTACGTCTGGATTTGATGAGAG GATTGCACAGAGAGGGAACATCAACGCAGATCCTTTGTTTCTTACTGCACCAACATCTTCATCTCTTATTAGAGATGTAAAGAGAACTTCTGTGGTTTGG GATCAAGAGGCTGGAAGATACGTATCAGTTCCTGTATCGTCGACTGATGCTCGAAGTAGACCAGCAGCACCACAGACTGGATTGTCGAAGCCTAGTGCAG AGGTAAGCATGTATGGTAAGAGGCCAGCGAATCCACCACCGGAAGGGTCCTCATCATCCATGGCGAAACCACCAGCACAGCAAGGGGAGAAACTGATGTA CACAGGGGACTCCATCTTTTTCGGCGGTCCACTCTTGAGTGCCCCACTTCGAGAAGGTTCGAGAAATGAAGGGAGTTCAGGGTTAAGAGATGGTCATCAG AGGTTTGCATTGAACTTGCCTCGAGAATCGAGGTTCCGAAGAGATTCTGTCTCGAATCAGCTCCCTGTTTTCACCCCTGCTGGATCTGAGCACCAAGGTT GA
AA sequence Show only first row Show all	>Lus10027339 pacid=23145567 polypeptide=Lus10027339 locus=Lus10027339.g ID=Lus10027339.BGIv1.0 annot-version=v1.0 MARKHGWQLPAHTFQVVAITVFCLLVIAFYAFFAPFLGGHIWEYTLIGVYSPVVLLVFILYVRCTAINPADPGIMSKFNPHIAPNTNAKHRQFGETGSAM HSSPSSMSKSSIAAANSSRQGSFGDTGRAPAEPPAQTSCSILGGILCAVFVHEDCRKQEGITDEQGSVEDALFCTLCNAEVRKFSKHCRSCDKCVDGFDH HCRWLNNCVGHKNYVTFISLMATSFVWLVLEAGVGIAVLVRCFVNKKSMSAEIVDTLGNGFSRAPFATVVSVCTAVSILACIPLGELFFFHMILIRKVNP ETGITTYEYVVAMRAMSEGPALNLDEQFNNAGNSPTGSATTGFSGGSSLGLQYKGAWCTPPRIFVDYQDEVIPHLEPGMVPSTIDPDAGGDNGERANRPG KRPVRISAWKLAKLDSNEAMKAAAKARASSSVLKPAEGSQQFPYLVEGSSSGNMSVRSSVSAEIVPNKGIKSDLLRLPSQDHSVPPSLGSHDDCEAGAQS VSSFDSPSHIHESVTLSPLPQGHRLGHPKAATSVTGFIPCGHPVTSKTTDTSGNNPLTLSTSGFDERIAQRGNINADPLFLTAPTSSSLIRDVKRTSVVW DQEAGRYVSVPVSSTDARSRPAAPQTGLSKPSAEVSMYGKRPANPPPEGSSSSMAKPPAQQGEKLMYTGDSIFFGGPLLSAPLREGSRNEGSSGLRDGHQ RFALNLPRESRFRRDSVSNQLPVFTPAGSEHQG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15080			DHHC-type zinc finger family p...		Lus10027339 [exp]	0	1
AT4G16180			unknown protein		Lus10017062 [exp]	7.1	0.8815
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10012507 [exp]	9.4	0.8771
AT4G00570		NAD-ME2	NAD-dependent malic enzyme 2 (...		Lus10009822 [exp]	13.7	0.8444
AT1G26460			Tetratricopeptide repeat (TPR)...		Lus10026663 [exp]	14.1	0.8718
AT5G26710			Glutamyl/glutaminyl-tRNA synth...		Lus10026044 [exp]	14.1	0.8270
AT3G03570			Protein of unknown function (D...		Lus10005664 [exp]	14.7	0.8643
AT3G26780		MEF14	mitochondrial editing factor 1...		Lus10035155 [exp]	16.6	0.8727
AT2G46900			unknown protein		Lus10010275 [exp]	17.7	0.8731
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Lus10005061 [exp]	28.2	0.8671
AT4G25730			FtsJ-like methyltransferase fa...		Lus10023555 [exp]	31.0	0.8580

Compare expression of checked genes

Lus10027339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.