Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24280 975 / 0 CPHSC70-1 chloroplast heat shock protein 70-1 (.1) AT5G49910 955 / 0 CPHSC70-2EATSHOCKPROTEIN70-2, HSC70-7, cpHSC70-2 ,CPHSC70-2EAT SHOCK PROTEIN 70-2 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) AT5G09590 581 / 0 HSC70-5, mtHSC70-2 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) AT4G37910 550 / 0 MTHSC70-1 mitochondrial heat shock protein 70-1 (.1) AT5G28540 484 / 4e-158 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 484 / 9e-158 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT3G12580 471 / 3e-153 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT5G02490 469 / 3e-152 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT5G02500 468 / 4e-152 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT1G16030 467 / 1e-151 HSP70B heat shock protein 70B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039044 [exp] 1116 / 0 AT5G49910 1164 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10017566 [exp] 1033 / 0 AT5G49910 1152 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10037357 [exp] 1005 / 0 AT5G49910 1191 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10010496 [exp] 1004 / 0 AT4G24280 1120 / 0.0 chloroplast heat shock protein 70-1 (.1) Lus10035781 [exp] 1003 / 0 AT5G49910 1187 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10009039 [exp] 590 / 0 AT5G09590 1147 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10009677 [exp] 589 / 0 AT5G09590 1152 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10041999 [exp] 583 / 0 AT5G09590 1138 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10018003 [exp] 553 / 0 AT5G09590 1065 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G006300 [exp] 1017 / 0 AT4G24280 1110 / 0.0 chloroplast heat shock protein 70-1 (.1) Potri.004G224400 [exp] 1002 / 0 AT4G24280 1108 / 0.0 chloroplast heat shock protein 70-1 (.1) Potri.009G079700 [exp] 588 / 0 AT5G09590 1153 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Potri.001G285500 [exp] 544 / 0 AT5G09590 934 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Potri.001G087500 [exp] 489 / 6e-160 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.003G143600 [exp] 488 / 2e-159 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.001G042700 [exp] 480 / 1e-156 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G205700 [exp] 479 / 2e-156 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.012G017600 [exp] 480 / 3e-156 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G042600 [exp] 476 / 3e-155 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10027341 pacid=23145566 polypeptide=Lus10027341 locus=Lus10027341.g ID=Lus10027341.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCGACTGCCCAGATTCATGTTCTCGGAGGCATGGGGTTTGTTTCATCTGGGTCAAAGAAACCCAGCTTCTCTTTCGCCCCAAAGACCGTTT TCCCGGGTCAAAGCTTGGGCGGTTCTAGAACGGCGGCGGTTTTGAGGTACAACGCGCGGCGGAGAAGCTACAGCAGCGGACGGTTGAGAGTGGCGTGTGA GAAAGTGGTGGGAATCGATCTTGGTACCACCAATTCCGCTGTTGCCGCCATGGAAGGAGGGAAGCCGACTATTGTGACCAATGCGGAGGGGCAGAGGACT ACACCGTCGGAGGTGGCGTATACGAAGAACGGTGATAGGCTGGTTGGTCAGATTGCGAAGCGGCAGGGAGTGGTGAACCCGGAGAACACTTTCTTCTCGG TGAAGAGGTTCATCGGGAGGAAGATGTTGGAGGTGGATGAAGAGTCCAAACAGGTTTCTTATAGAGTGGTTAGGGACGACAATGGGAATGTTAAGCTGGA TTGTCCAATTTTGGGTAAACAGTTTGCTGCTGAAGAGATTTCAGCTCAGGTTTTACGAAAACTCGTGGATGATGCTTCAAAATTTTTGAATGATAAAGTG ACAAAAGCTGTGGTTACTGTACCTGCTTACTTTAACGACTCTCAAAGGACAGCAACGAAGGATGCTGGCCGAATTGCTGGGCTGGAAGTCCTCCGGATCA TCAATGAGCCTACGGCTGCTTCACTGGCTTATGGATTTGAAAGGAAGAACAACGAGACCATCTTGGTGTTTGATCTTGGCGGTGGGACTTTCGATGTTTC AGTTCTTGAGGTTGGTGATGGAGTCTTTGAAGTGCTCTCTACCTCTGGAGATACACATTTGGGTGGTGATGATTTTGACAAGAGAATTGTCGATTGGCTA GCCGGGGACTTCAAGAGCAATGAAGGTATTGACCTTTTGAAAGACAAGCAGGCTCTCCAAAGGCTAACCGAGACAGCTGAGAAAGCCAAAATGGAGCTGT CATCTTTGACTCAAGCAAACATCAGTTTGCCATTCATCACCGCAACCGCTGAGGGACCCAAGCACATCGAGACTACTCTTACGAGGGCTAAGTTTGAGGA GTTATGCTCTGATCTCCTGGATAGGCTTAAAACTCCAGTTGAGAATTCCTTGAGGGATGCCAAACTTACCTTTAAGGACTTGGACGAAGTCATCCTTGTT GGTGGCTCTACGCGTATACCTTCGGTGCAAGGACTTGTGAAGAAACTCACTGGGAAGGATCCTAATGTCACAGTAAATCCGGATGAAGTTGTTGCTTTGG GCGCCGCAGTTCAGGCTGGTGTTTTGTCCGGTGATGTCAGCGACATTGTGCTGTTGGATGTCACGCCGCTATCAATTGGATTGGAGACCCTCGGAGGAGT GATGACAAAGATCATTCCGAGAAACACCACCTTGCCATCATCCAAATCAGAGGTGTTCTCAACTGCTGCTGATGGGCAAACAAGTGTCGAGATCAACGTT CTTCAAGGTGAGAGAGAGTTTGTTAGGGACAACAAGTCTCTAGGAAGCTTCCGCTTGGATGGCATCCCGCCAGCACCGCGTGGGGTCCCACAAATCGAAG TTAAATTCGATATCGACGCTAATGGCATCCTCTCAGTCTCTGCTGCTGATAAGGGCACTGGGAAAAAACAAGACATTACAATCACTGGCGCCAGCACTCT GCCTAGTGATGAGGTTTTACGAAAACTCGTGGATGATGCTTCAAAATTTTTGAATGATAAAGTGACAAAAGCTGTGGTTACTGTACCTGCTTACTTTAAC GACTCTCAAAGGACAGCAACGAAGGATGCTGGCCGAATTGCTGGGCTGGAAGTCCTCCGGATCATCAATGAGCCTACGGCTGCTTCACTGGCTTATGGAT TTGAAAGGAAGAACAACGAGACCATCTTGGTGTTTGATCTTGGCGGTGGGACTTTCGATGTTTCAGTTCTTGAGGTTGGTGATGGAGTCTTTGAAGTGCT CTCTACCTCTGGAGATACACATTTGGGTGGTGATGATTTTGACAAGAGAATTGTCGATTGGCTAGCCGGGGACTTCAAGAGCAATGAAGGTATTGACCTT TTGAAAGACAAGCAGGCTCTCCAAAGGCTAACCGAGACAGCTGAGAAAGCCAAAATGGAGCTGTCATCTTTGACTCAAGCAAACATCAGTTTGCCATTCA TCACCGCAACCGCTGAGGGACCCAAGCACATCGAGACTACTCTTACGAGGGCTAAGTTTGAGGAGTTATGCTCTGATCTCCTGGATAGGCTTAAAACTCC AGTTGAGAATTCCTTGAGGGATGCCAAACTTACCTTTAAGGACTTGGACGAAGTCATCCTTGTTGGTGGCTCTACGCGTATACCTTCGGTGCAAGGACTT GTGAAGAAACTCACTGGGAAGGATCCTAATGTCACAGTAAATCCGGATGAAGTTGTTGCTTTGGGCGCCGCAGTTCAGGCTGGTGTTTTGTCCGGTGATG TCAGCGACATTGTGCTGTTGGATGTCACGCCGCTATCAATTGGATTGGAGACCCTCGGAGGAGTGATGACAAAGATCATTCCGAGAAACACCACACTGCC GTCATCCAAATCAGAGGTGTTCTCAACTGCTGCTGATGGGCAAACAAGTGTCGAGATCAACGTTCTTCAAGGTGAGAGAGAGTTTGTTAGGGACAACAAG TCTCTAGGAAGCTTCCGCTTGGATGGCATCCCGCCAGCACCGCGTGGGGTCCCACAGATCGAAGTTAAATTCGATATCGACGCCAATGGCATCCTCTCAG TCAGTGCTGCTGATAAGGGCACTGGGAAAAAGCAAGACATTACAATCACTGGTGCCAGCACTCTGCCAAGTGATGAGGTTGAGAGGATGGTCCAAGAAGC GGAGAGGTTTTCGAAGGAGGACAAGGAGAAGAGGGACGCCATTGACACGAAGAACCAAGCTGATTCTGTTGTTTATCAAACCGAGAAGCAGCTCAAGGAG CTCGGAGACAAAGTTCCGGGCGAGGTGAAAGAAAAGGTTGAGTCTAAATTGCAAGAGCTGAGGGATGCCATTGCTGGAGGATCAACTCAAACAATGAAAG ATGCGATGACAACTCTCAATCAGGAAGTCATGCAACTCGGCCAGTCCCTTTACAACCAACAAGGTTCGGGTGCGGGTGAAGGTCCAACAACTCCGGGGAG TGAATCTGGGCCATCGTCGTCTTCCGATTCTTCTAGCAAGGGACCCGATGGAGATGTCATTGATGCCGATTTCACAGACAGCAAGTGA
AA sequence Show only first row Show all	>Lus10027341 pacid=23145566 polypeptide=Lus10027341 locus=Lus10027341.g ID=Lus10027341.BGIv1.0 annot-version=v1.0 MASSTAQIHVLGGMGFVSSGSKKPSFSFAPKTVFPGQSLGGSRTAAVLRYNARRRSYSSGRLRVACEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRT TPSEVAYTKNGDRLVGQIAKRQGVVNPENTFFSVKRFIGRKMLEVDEESKQVSYRVVRDDNGNVKLDCPILGKQFAAEEISAQVLRKLVDDASKFLNDKV TKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWL AGDFKSNEGIDLLKDKQALQRLTETAEKAKMELSSLTQANISLPFITATAEGPKHIETTLTRAKFEELCSDLLDRLKTPVENSLRDAKLTFKDLDEVILV GGSTRIPSVQGLVKKLTGKDPNVTVNPDEVVALGAAVQAGVLSGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPSSKSEVFSTAADGQTSVEINV LQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSAADKGTGKKQDITITGASTLPSDEVLRKLVDDASKFLNDKVTKAVVTVPAYFN DSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAGDFKSNEGIDL LKDKQALQRLTETAEKAKMELSSLTQANISLPFITATAEGPKHIETTLTRAKFEELCSDLLDRLKTPVENSLRDAKLTFKDLDEVILVGGSTRIPSVQGL VKKLTGKDPNVTVNPDEVVALGAAVQAGVLSGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPSSKSEVFSTAADGQTSVEINVLQGEREFVRDNK SLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSAADKGTGKKQDITITGASTLPSDEVERMVQEAERFSKEDKEKRDAIDTKNQADSVVYQTEKQLKE LGDKVPGEVKEKVESKLQELRDAIAGGSTQTMKDAMTTLNQEVMQLGQSLYNQQGSGAGEGPTTPGSESGPSSSSDSSSKGPDGDVIDADFTDSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Lus10027341 [exp]	0	1
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10039044 [exp]	1.0	0.9392
AT3G59760		ATCS-C, OASC	ARABIDOPSIS THALIANA CYSTEINSY...		Lus10027056 [exp]	1.4	0.8927
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Lus10028706 [exp]	2.4	0.8800
AT4G30950		FADC, SFD4, FAD...	STEAROYL DESATURASE DEFICIENCY...		Lus10035831 [exp]	2.8	0.8615
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Lus10006048 [exp]	2.8	0.8725
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10029284 [exp]	4.7	0.8541
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10012974 [exp]	6.8	0.8213
AT3G22150			Tetratricopeptide repeat (TPR)...		Lus10003806 [exp]	7.3	0.8138
AT4G02990		RUG2, BSM	RUGOSA 2, BELAYA SMERT, Mitoch...		Lus10022321 [exp]	9.2	0.8647
AT5G50250		CP31B	chloroplast RNA-binding protei...		Lus10017962 [exp]	10.0	0.8695

Compare expression of checked genes

Lus10027341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.