Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02870 418 / 9e-149 VTC4 Inositol monophosphatase family protein (.1.2.3) AT1G31190 140 / 7e-39 IMPL1 myo-inositol monophosphatase like 1 (.1) AT4G39120 96 / 3e-22 HISN7, IMPL2 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) AT5G09290 49 / 2e-06 Inositol monophosphatase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039046 [exp] 398 / 2e-139 AT3G02870 323 / 1e-110 Inositol monophosphatase family protein (.1.2.3) Lus10018305 [exp] 140 / 8e-39 AT1G31190 573 / 0.0 myo-inositol monophosphatase like 1 (.1) Lus10041968 [exp] 100 / 3e-24 AT4G39120 447 / 6e-158 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) Lus10040601 [exp] 97 / 9e-23 AT1G31190 476 / 2e-169 myo-inositol monophosphatase like 1 (.1) Lus10017976 [exp] 84 / 3e-18 AT4G39120 429 / 9e-151 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) Lus10038597 [exp] 42 / 0.0005 AT5G54390 505 / 2e-180 HAL2-like (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G011000 [exp] 458 / 1e-164 AT3G02870 440 / 5e-158 Inositol monophosphatase family protein (.1.2.3) Potri.010G156300 [exp] 456 / 7e-164 AT3G02870 438 / 4e-157 Inositol monophosphatase family protein (.1.2.3) Potri.006G014900 [exp] 453 / 2e-162 AT3G02870 442 / 8e-159 Inositol monophosphatase family protein (.1.2.3) Potri.010G156500 [exp] 432 / 3e-154 AT3G02870 421 / 7e-151 Inositol monophosphatase family protein (.1.2.3) Potri.012G120492 [exp] 139 / 2e-38 AT1G31190 551 / 0.0 myo-inositol monophosphatase like 1 (.1) Potri.015G120400 [exp] 134 / 3e-36 AT1G31190 540 / 0.0 myo-inositol monophosphatase like 1 (.1) Potri.009G120600 [exp] 94 / 5e-22 AT4G39120 466 / 2e-165 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0171 [flax] [poplar] Phospoesterase PF00459 [flax] [poplar] Inositol_P Inositol monophosphatase family
Representative CDS sequence Show only first row Show all	>Lus10027343 pacid=23145378 polypeptide=Lus10027343 locus=Lus10027343.g ID=Lus10027343.BGIv1.0 annot-version=v1.0 ATGGCGGAAAATGGTAATCTATCTACCCTTTGTAGCCCCTTTTGCTTTCTTCTTCGTTTTGTTTTTGTTTTCCCCAATGTGGACTCTCTGTCTCTCGATT TGCTGGTAATTTTGATCGGGTTCTTCTCAGATTCGCTCAAAGAGTTCTTGGAGACGGCAGTTGATGCAGCGAAGAAAGCTGGACAGGTAATCCGCAAAGG GTTCTATCTGACCAAACAAGTCGAGCATAAAGGAACTGTTGATTTAGTTACAGAAACTGACAAGGCTTGTGAAGATCTTGTTTTCAATCTTCTCAAGGAG AAGTATCCCACCCATATGTTCATTGGAGAAGAGACAACTGCTGCAAATGGTGTCACCGAGCTGACTGATGAACCAACATGGATTGTGGATCCTCTGGATG GAACCACCAACTTTGTGCATGGGTTTCCCTTTGTTTGCATTTCCATTGGCCTTACAATTGGCAAGGCTCCCAAAGTAGGAGTTGTGTACAATCCAATAAT GGAAGAGCTATACACAGCCATCCATGGCCAAGGTGCTTTCTTGAATGGAAAAGCTCTTAAAGTATCTTCTCAACCTGAGCTTGTGAAGGCTCTTCTCGTG ACAGAGGTAGGAACGAAACGTGACAAGGCGACTGTGGATCTTACTACTAACAGAATCAACAGCTTGCTATATAAGGTGAGATCCCTCAGGATGAGTGGCT CTTGTGCATTGAATCTCTGCGGAGTTGCATCTGGGAGAATCGATTTGTTCTATGAAACTGGATATGGTGGCCCCTGGGATGTAGCAGCTGGCGTTCTTCT TGTTCAAGAAGCCGGTGGACATATTTTCGATCCATCTGGTAAAGCATTCGACATTACATCACAAAGAGTTGCAGCATCGAACTCTCTCCTAAAGGAGGCA TTCGTCGAGGCGTTGGCACAATCGGACTAA
AA sequence Show only first row Show all	>Lus10027343 pacid=23145378 polypeptide=Lus10027343 locus=Lus10027343.g ID=Lus10027343.BGIv1.0 annot-version=v1.0 MAENGNLSTLCSPFCFLLRFVFVFPNVDSLSLDLLVILIGFFSDSLKEFLETAVDAAKKAGQVIRKGFYLTKQVEHKGTVDLVTETDKACEDLVFNLLKE KYPTHMFIGEETTAANGVTELTDEPTWIVDPLDGTTNFVHGFPFVCISIGLTIGKAPKVGVVYNPIMEELYTAIHGQGAFLNGKALKVSSQPELVKALLV TEVGTKRDKATVDLTTNRINSLLYKVRSLRMSGSCALNLCGVASGRIDLFYETGYGGPWDVAAGVLLVQEAGGHIFDPSGKAFDITSQRVAASNSLLKEA FVEALAQSD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02870		VTC4	Inositol monophosphatase famil...		Lus10027343 [exp]	0	1
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10009323 [exp]	26.4	0.8043
AT4G16650			O-fucosyltransferase family pr...		Lus10007481 [exp]	27.7	0.7067
AT3G10220		EMB2804	EMBRYO DEFECTIVE 2804, tubulin...		Lus10042405 [exp]	31.9	0.7915
AT1G30130			unknown protein		Lus10042821 [exp]	45.6	0.7253
AT3G20790			NAD(P)-binding Rossmann-fold s...		Lus10031814 [exp]	82.0	0.7118
AT1G78560			Sodium Bile acid symporter fam...		Lus10035803 [exp]	113.1	0.6758
AT5G07590			Transducin/WD40 repeat-like su...		Lus10042992 [exp]	130.6	0.7060
AT1G60660		B5 #5, B5#5, AT...	ARABIDOPSIS CYTOCHROME B5-LIKE...		Lus10034972 [exp]	147.3	0.6768
AT3G06890			unknown protein		Lus10006514 [exp]	167.0	0.6757
AT5G67280		RLK	receptor-like kinase (.1)		Lus10019816 [exp]	176.3	0.6788

Compare expression of checked genes

Lus10027343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.