Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53420 190 / 1e-59 CCT motif family protein (.1.2.3) AT4G27900 175 / 1e-53 CCT motif family protein (.1.2) AT2G33350 83 / 7e-18 CCT motif family protein (.1.2) AT5G41380 82 / 7e-18 CCT motif family protein (.1) AT1G63820 79 / 6e-17 CCT motif family protein (.1) AT1G04500 76 / 1e-15 CCT motif family protein (.1) AT5G59990 64 / 7e-12 CCT motif family protein (.1.2) AT3G12890 64 / 9e-12 ASML2 activator of spomin::LUC2 (.1) AT5G57660 57 / 3e-09 CO COL5, ATCOL5 CONSTANS-like 5 (.1) AT3G21880 57 / 5e-09 CO COL12 B-box type zinc finger protein with CCT domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014919 [exp] 477 / 2e-172 AT5G53420 205 / 3e-65 CCT motif family protein (.1.2.3) Lus10019027 [exp] 294 / 1e-99 AT5G53420 250 / 8e-83 CCT motif family protein (.1.2.3) Lus10005008 [exp] 288 / 1e-97 AT5G53420 254 / 2e-84 CCT motif family protein (.1.2.3) Lus10024655 [exp] 74 / 8e-15 AT1G63820 180 / 2e-54 CCT motif family protein (.1) Lus10032288 [exp] 73 / 2e-14 AT1G63820 160 / 5e-47 CCT motif family protein (.1) Lus10014478 [exp] 69 / 7e-14 AT1G04500 219 / 4e-70 CCT motif family protein (.1) Lus10023727 [exp] 71 / 2e-13 AT1G04500 315 / 3e-100 CCT motif family protein (.1) Lus10028137 [exp] 61 / 1e-10 AT5G59990 101 / 2e-25 CCT motif family protein (.1.2) Lus10031192 [exp] 61 / 2e-10 AT3G12890 107 / 2e-27 activator of spomin::LUC2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G014000 [exp] 265 / 1e-88 AT5G53420 275 / 1e-92 CCT motif family protein (.1.2.3) Potri.012G014000 [exp] 251 / 2e-83 AT5G53420 257 / 1e-85 CCT motif family protein (.1.2.3) Potri.010G066100 [exp] 83 / 5e-18 AT1G04500 263 / 3e-84 CCT motif family protein (.1) Potri.001G101200 [exp] 81 / 1e-17 AT5G41380 187 / 4e-57 CCT motif family protein (.1) Potri.003G130500 [exp] 80 / 4e-17 AT5G41380 210 / 8e-66 CCT motif family protein (.1) Potri.001G233600 [exp] 78 / 6e-17 AT5G59990 125 / 3e-35 CCT motif family protein (.1.2) Potri.008G171500 [exp] 75 / 4e-15 AT1G04500 305 / 8e-101 CCT motif family protein (.1) Potri.007G066800 [exp] 65 / 7e-12 AT3G12890 120 / 2e-32 activator of spomin::LUC2 (.1) Potri.005G097700 [exp] 63 / 3e-11 AT3G12890 156 / 2e-46 activator of spomin::LUC2 (.1) Potri.001G136700 [exp] 62 / 3e-11 AT3G12890 85 / 3e-19 activator of spomin::LUC2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Lus10027344 pacid=23145547 polypeptide=Lus10027344 locus=Lus10027344.g ID=Lus10027344.BGIv1.0 annot-version=v1.0 ATGTACACAGCAGAGACAGAGCTACTGTTTCCATATCTCCAGAGCTTCTCCCTCCACCAGCTCGATGACTACTGCACCAACCACCACAATGCTTCCTCTT CCATGAGTAACATGATGCAAGCCTCTACAATATCCGAATACGACTTGGGAGGGGAAGGGGACCTATTCAAAGCACCCGAACCGATCATTTTGGAGCCATC ATTACTCAGTCTCGACCCGATGACAGCCGCCCTTTCGATGATCTCCTGCAGTGGGGAGGAAATCCTGACCCCATCAGGATTGAAAGCCGTGGACACCACA ATTCAGAATGAGCAGCTTTACTACGAGTGCAAGAAGGACCTCATGGAAATGGCTGCTACTCTTAATTCGGACGATGTGATCAACAACATCCCACTGATGA GCAAAGAAGAGGATCGGGATAATCACGATCTGACGATCCTGGCGAAGAGCAGTAGCTCGGGATGCTTGAGCTCCATGGACTGGATCTCAGATGGTGGTTC GAGCTTTCTTGACTTCCCTGCAGGGCTGGATTTCACCTTCGCTTATGGGATGAGAAGGGCATTCAGCGAAGGGGATATACAGGCTCTTAGCAATGGAGCA ATGGGTCTCAGCCATTCTCCAATTAGGCCACTTATCATCAGCAGCTGCACCTCTGATGCTGCACGTAAGGAGAAACTCTCCAGGTACAGGGACAAGAAGA ACAGGAGGAACTTTGGCAGAAAGATCAAGTATGCATGCAGGAAGGCATTAGCAGACAGCCAACCGAGGATTCGTGGCCGGTTCGCCAAGACTGAAGAATC TGATCTGGTGCTGAAGAGGGATTAG
AA sequence Show only first row Show all	>Lus10027344 pacid=23145547 polypeptide=Lus10027344 locus=Lus10027344.g ID=Lus10027344.BGIv1.0 annot-version=v1.0 MYTAETELLFPYLQSFSLHQLDDYCTNHHNASSSMSNMMQASTISEYDLGGEGDLFKAPEPIILEPSLLSLDPMTAALSMISCSGEEILTPSGLKAVDTT IQNEQLYYECKKDLMEMAATLNSDDVINNIPLMSKEEDRDNHDLTILAKSSSSGCLSSMDWISDGGSSFLDFPAGLDFTFAYGMRRAFSEGDIQALSNGA MGLSHSPIRPLIISSCTSDAARKEKLSRYRDKKNRRNFGRKIKYACRKALADSQPRIRGRFAKTEESDLVLKRD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53420			CCT motif family protein (.1.2...		Lus10027344 [exp]	0	1
AT5G06430			Thioredoxin superfamily protei...		Lus10021764 [exp]	7.3	0.6566
AT3G24860	Trihelix		Homeodomain-like superfamily p...		Lus10022789 [exp]	21.4	0.6461
AT1G03080			kinase interacting (KIP1-like)...		Lus10006607 [exp]	34.1	0.6331
AT2G37380		MAKR3	MEMBRANE-ASSOCIATED KINASE REG...		Lus10024441 [exp]	39.5	0.6437
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10017890 [exp]	68.9	0.6112
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10035065 [exp]	77.5	0.6075
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10038905 [exp]	88.0	0.5935
AT1G51940			protein kinase family protein ...		Lus10004625 [exp]	92.5	0.5793
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Lus10023579 [exp]	157.3	0.5652

Compare expression of checked genes

Lus10027344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.