Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12400 910 / 0 DNA binding;zinc ion binding;DNA binding (.1) AT5G22760 426 / 2e-123 PHD finger family protein (.1) AT5G35210 405 / 2e-116 metalloendopeptidases;zinc ion binding;DNA binding (.1.2) AT1G05380 61 / 1e-08 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT5G44800 61 / 1e-08 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT4G14920 60 / 2e-08 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G36740 59 / 3e-08 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G36670 59 / 3e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G63900 57 / 1e-07 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT3G14980 56 / 2e-07 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014918 [exp] 3052 / 0 AT5G12400 1062 / 0.0 DNA binding;zinc ion binding;DNA binding (.1) Lus10009383 [exp] 411 / 2e-117 AT5G22760 714 / 0.0 PHD finger family protein (.1) Lus10020532 [exp] 238 / 9e-63 AT5G22760 731 / 0.0 PHD finger family protein (.1) Lus10006110 [exp] 65 / 9e-10 AT4G14920 868 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10010562 [exp] 64 / 9e-10 AT4G14920 847 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10007741 [exp] 61 / 8e-09 AT5G58610 323 / 4e-96 PHD finger transcription factor, putative (.1) Lus10018681 [exp] 61 / 1e-08 AT5G58610 308 / 1e-90 PHD finger transcription factor, putative (.1) Lus10025386 [exp] 57 / 1e-07 AT5G58610 271 / 4e-77 PHD finger transcription factor, putative (.1) Lus10012522 [exp] 56 / 3e-07 AT5G58610 285 / 4e-84 PHD finger transcription factor, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G254300 [exp] 1231 / 0 AT5G12400 1020 / 0.0 DNA binding;zinc ion binding;DNA binding (.1) Potri.009G049100 [exp] 1164 / 0 AT5G12400 1084 / 0.0 DNA binding;zinc ion binding;DNA binding (.1) Potri.009G150200 [exp] 430 / 7e-124 AT5G22760 855 / 0.0 PHD finger family protein (.1) Potri.004G189600 [exp] 243 / 2e-64 AT5G22760 879 / 0.0 PHD finger family protein (.1) Potri.010G087700 [exp] 64 / 1e-09 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.008G152600 [exp] 62 / 4e-09 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.003G110100 [exp] 61 / 1e-08 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.001G123400 [exp] 60 / 2e-08 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.001G392801 [exp] 60 / 2e-08 AT3G14980 620 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.004G217600 [exp] 57 / 1e-07 AT2G27980 740 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0390 [flax] [poplar] PF02791 [flax] [poplar] DDT DDT domain
Representative CDS sequence Show only first row Show all	>Lus10027346 pacid=23145349 polypeptide=Lus10027346 locus=Lus10027346.g ID=Lus10027346.BGIv1.0 annot-version=v1.0 ATGGAGTTCGTCGGGAAGCAAGTGAGGAAGGACTCGAGAGGCGGCGGAGGCTCGTTGTCGTTCACGGCGGGAATCGTGAAATCCTACGACGCTTCCTCCG GCTCCTTCGAGATCGTCTACGAGGACGGCGATTCCGAGGAGCTGGATTTCGCGGCGGTGGAAGCGGCGGTGTCGGAGGACCGGGAATTGGGAGCTGGTGA AGTGGTGGTTGACCGCTGTCCACGGCTGGGGCGGAAGCCGAAGAAGCGCCGCCGTGTTGACCCGGATGGACTGGGAGACGGCGGCGGCGATGAAGCCGGG TCAATTGTAGGTAATGGTGTTTTGTTAGATATGAATAGTGTTAATGTTGATTTGCGAGAGGGAGAGGATGGTGCGGTTTTGGGAGGGAATAGTGAGGTTG GTCATGAGAATTGTGGTAGAGTTGGAGTTGATTTGAATGAAACCTTAGGTAAGGAATGCGATGTAGATGGGAATTCTAGGGGCATTGGGGCTGAAAATGG GGTTATGTTGCATGCAAATCCTGGTGAAAAACAGGAGCTTGATCTGAATGCTGCTTTTAGCTTGAATTTGAATGAAGTGGCTTTTGACTTGAATGAAGAC GACCATGGGAAGCCGGATACTTCTGCAGGTTTGAAGGATAGAGGTTGCATTGACTTGAACTTAGATGCTAATGGGGAGTTGGATGAGAATGCTAAGGAAA TGGATTCTGGTGGAGGTGATGCCGTGGACTCCCTGAAAAAAGAGTGTCGCTTTGATTTGAATATGGGTTTGGATGAGGAAATTAAGGATGAACAAGATGG ATATTGTGTGGGACGAGTGAAAGGTGATTCGGGTTTTGAGACAGCAAAAGAGGATGCTCAGAGTACCTTGGTGGGTAGCAGAGTTGTTGAGGTAAATGAG AATGGGGCTGCTCTTTCCAATGGTGTGGTTGAGAATCATCATGGCTCTAATGATAATTCATGTCATGCATCAGCTGCAAGTGTGTGGAAAATGGACAATG TTTCTGTTGACAATTTCGGGAACTGCAATTCTGTTCTGGGAAGGGATGCTCCGGATGTTAAAGTGGATTCTAATGCTAGTATTAGCAGGAACCAAGTTGG AACTAGAAGAAGTGGGAGGAGGAGAAAGGTTGCTGGCAACCCAAATCCTACTGTAGAAGAAACGGTGTCAGCCAACCGTACTGGTATTAAGGAAGATGTG GGTGTGGTAGTCGATGGGAACCAGCAACATTTAGGCAGTGCATGTAAAGATTTCAGCGCAAGCCGTAGAAAGAGACGGAAGTTTTCAGATGACCCTGTCC AAGAAACTGTGATGTTAAGAAGGAGTGCACGTAGGGGATCAGCTAAAAAACATGATGTAACTACTACAGCATCTGATGAGGTCTTTAAGTCAGTGTCCCC TGAAGTTAGTGCATTAAGTGACGAGAAACCATGGAAATTGTATTATGAACCAGAAGAAGAGCTCGTTGTTCTTCCTCCACAGGTGGAGCTACCACCTTCC TCACAAAATTTGGATTTGGGTGGAATCCCCACACTTGATCTGTTCTCAATTTATTCATGTTTAAGATCATTTAGTAATTTGCTTTTCTTAAGTCCCTTCA AGTTGGAAGATTTTGTGGAGGCCCTGAAGAGCAACCTGCCAAGTGTGTTGTTTGATTGCATTCATGTTTCCATTTTGCAAATACTCAGACAGCGTTTGGA ATACCTTTCAGTTGAAGGCTCTGAATCTGCTTCGGATTGCCTTAGGAACCTTAACTGGGATTTTTTAGATTTGGTTACGTGGCCCTTGTTTATGGTTGAG TACTTTCTAGTACACTGTTCAAGCGAGAAACATGGATTAGATCCCAGTTGCTTGAAGCTATTCAAAAGTGATTACTATCAACAACCTGTGTCGGTGAAGG TTGGCATGCTCAGGTGTCTATGTGATGATATGATTGAGGCAGAGGCCATTCGGGCTGAGCTAAACAGGAGGTCTTCAGGTGCAGAACTTGAGTTGGATTT TGATCGGAGTGTCAACCTTGGATCTTCCAGGAAAAGGAAGGCTATTGTAGATTTAGGACGTGGTTCTGGCTTGGCTGAGGATGCTATTGACGACACAATG GATTTGAACGTTGATGAATGTTGCCTTTGTAAGATGGATGGAAACTTGATTTGTTGCGATGGTTGCCCTGCAGCATATCATTCTAAGTGTGTAGGAGTTG CTAATGATTCTTTGCCGGAGGGAGATTGGTACTGTCCTGAGTGTGCAGTTGATAAACCATCAGTGAGACATCGGAAGACACTACGTGGAGCAGAAGTATT GGGAGTGGATCCTCACGGCCGAATATATTTTGGCAGCTGTGGCTACCTTTTAGTGTCAGATTCAAGTGACTCCGACTCCTTTAGTTATTATCACAGAGAT GATCTACATGCTTTAATTGATGCGCTAAGATCTTCATATAGGTTTTATCGTAACATTATAGAGGCAATCTCTAAAAACTTGGACGTCCCTGTTAGGAATT TGAATACTGTACATCATTTAGGCAAGTTATTGCCTTCACGTTCTTTGGCATCCACGGTTAAGGAGAATGTTAATGAAAGGAAATCCGAAGGTACATCATC TTCTTGTCTGTTTGATGCATCAAAGTCTTTGAGCTCTACGCATATAAGCTCTGAAGGATCAGCTGAAACCACTCAAATTGGTCCAGTTAGTCAGAATTTT CAGAAAGAAGGGCTTGACGGTTCTAATCAATCAGCTGACAACTGTAATGATCCTGAGATGAAAAACTCGGTGGAACCAAAACCGGGAAGTGACCCACATT CTTCTGCTGTGAACACAATACCATTGACGACATACATTAATCACTACAGTTTTGGTCAATCTGCCTCTCGAGTTGCGGAAGACTTGATGACCAAGTCATC AAATAAAATATTGGACGCGTCAGCAAAGTCGGATGAGGAAATGATTTCTGCTCAGATGAAGATTATTCTGAAAAACACCTCAAAGTTACGTTGGCCAAGT ATTCAGAGTAGTAAGTTAATGGTGCAGAGGGAGAAATGTGGATGGTGCTTCATGTGCCGTGCACCAATGGATGATTTGGATTGTTTGTTTAATATGAGTT TTGGCCCTGTCAAGGAAGTACCAGTAAGAGAAGTTCATGAGCTTCAGCTAGAAAAGAACAGGAATGGACATCTCACAGATGTAATAGGCCAAATCATCCA AATCGAAGAGCGGTTACAGGGGCTTCTACTTGGTCCATGGGTGAAACCAGATTATAGCACGCTATGGCGTGAAAACATACTCAAGGCCACAGATATTTCA TCTGTCAAATGCTTACTCCTAAAGTTAGAATCAAATGTCCATCAACGTGCAATTTCCACCGAATGGTTAAAACACATCGATTCTTCTGCAGTGGTCGGTT CAGCCTCTCACATTGTGGTCAATTCAAAAACCGCGGCTTCTAAATCCGCTGTAGGCGGCAGGAAGCGCAGCAAATCTGCAGAATCCGAACCTGGCCCTTC AAATGCCACTGGCGGATTGAGAATGTTGTGGTGGAGGGGGGGTAAACTTTCCCGTAAATTATTCAGTTGGAAGGTTTTACCTGTCAACTTGGCTTCCAAG GCTGCTAGGCAAGCTGGTCATACTAGAATACCAGGTATACTATATCCTGAAAATTCAGATTTCGCGAAGAGAACCAAATCTGTTGCTTGGCGAGCTGCTG TTGAGTCATCATCGACTCCCGAGCTTCTTGCTTTGCAGGTCAGAGAGCTTGATTCCAATATCAAGTGGGACGAAATGGAGAACTGGCATGCATTGTCAGC ACTAGATAAGGAGTACAAAAAGTCACTCAGGCTGTTCAAGAAAGTGATTGTACGCAGGAAATGCTCCGAGGGAGAAGGAACAAAGTATCTTCTCGATTTC GGCACGAGGAAAAGCATTCCTGAAGTGGTCATGAAAAACGGGTCGGTCGTCGAAGAATCTTCCAACGAAAAGAAGAGATATTGGGGGAGTCCGGTTCACG CCCCTTTGCATATGCTTAAAAATTTCGAAGAGAAAAGAGCTGCACGCAAGTCTAGCAAGATCGTCGGCTTGGGGAAACCCTCCAAGGAGAAAAACTCGTT GGCGAAATCATCCTCGGAGAAAAAGGGGTTCGCTTATCTCTTCGCAAGGTCTGAAAGATCGGATCTTTATCAGTGCGGTCACTGCAAGAAAGATGTTCCT AGCAGCGAGGCCGTATGCTGTCAATCTTGCCAGGAATTCTTCCATAAGAGGCATGCCAGAAAGTCTGGTAGTTCAAATCATGCGAAATGTGTATACACAT GCCACCATTGTTTCAGCGGGAACCGCATAAAGCTTGGCAAGAAGAAGGCCGGGAAGGGAAGCTTGAAAAGCACGAACAAGGCACAGCTGTCAAAGTCTAA GAAAGTGGCTATCGTTCGCAGGTCGGTTCGTCTTAAAAGGGGCAGTAGAAAGGGGTTAAGGGGTCGGCCACCTCGCGTAAAGGATGATCAGAAGGTGACT CCTCCTGGAAGAAAGGGCTTAAGGGGTCGGCCACCGCTCGTTAAGGACGATCAGAAGGCTGGAAAGCGTCCGAGGGGTAGGCCACCTCTCGTAAAGGACG GGCTAACTACTCCTCTTAAGCGCCCAAGGGGTCGACCACCGAAGGATACGGGGAATCAAACTATTACTCCTCCTCGAAAGAGCTTACGGGGTCGGCCACC CCTTGTGGAGAAGGCCGATGATCGAAAGACGACGACTCCTGTGATGATTACGTACTTGCGCCGTTCAGCTAGGCAGGCTACTACCCCACAGGCTACATCG CCCCAAGCACCTACGGCCCAGAGCGAAAATAGGGAACAGCTGAAACTGGGAAATGAGTTTCCTTTATCGCAGAAGAAGAGAAGCTCGACAAGCCATAGTT ACTGGCTTCATGGTCTTCGGGTGTCCGCAACATCAGGGGAGGATGAACGAGTTGTGCAATTTCGGAAAACTAGGCTTGTTGCTGCTTCAAGGAGCGACAT CGTTGATCAACAACCGAAATGCAGTCTGTGCCATGAATCAGAATACACATCGACTTCGAATTACATTTCGTGCGAGCTCTGTGAAGTATGGTTTCATGGA GATGCATTCGGACTCAATTCTGGCAACATCGATAGCGTTATTGGATTCCGTTGCCACTTGTGTCGAGAAAGGAGCCCTCCTTCATGTCCTTTCCTCGATA CCTTGAAAAGTGATGAACCTCAAGTAGTTCCTGAAGATGTCGTCGCTGGATCTGACAATTCGGAGGATGCAGATCTCGGCGGTGGTCATGATGCTCATCG TATGGAAACAGATCATCATCAGGATTCAAATGCTGCCATTGACGACAGTTAA
AA sequence Show only first row Show all	>Lus10027346 pacid=23145349 polypeptide=Lus10027346 locus=Lus10027346.g ID=Lus10027346.BGIv1.0 annot-version=v1.0 MEFVGKQVRKDSRGGGGSLSFTAGIVKSYDASSGSFEIVYEDGDSEELDFAAVEAAVSEDRELGAGEVVVDRCPRLGRKPKKRRRVDPDGLGDGGGDEAG SIVGNGVLLDMNSVNVDLREGEDGAVLGGNSEVGHENCGRVGVDLNETLGKECDVDGNSRGIGAENGVMLHANPGEKQELDLNAAFSLNLNEVAFDLNED DHGKPDTSAGLKDRGCIDLNLDANGELDENAKEMDSGGGDAVDSLKKECRFDLNMGLDEEIKDEQDGYCVGRVKGDSGFETAKEDAQSTLVGSRVVEVNE NGAALSNGVVENHHGSNDNSCHASAASVWKMDNVSVDNFGNCNSVLGRDAPDVKVDSNASISRNQVGTRRSGRRRKVAGNPNPTVEETVSANRTGIKEDV GVVVDGNQQHLGSACKDFSASRRKRRKFSDDPVQETVMLRRSARRGSAKKHDVTTTASDEVFKSVSPEVSALSDEKPWKLYYEPEEELVVLPPQVELPPS SQNLDLGGIPTLDLFSIYSCLRSFSNLLFLSPFKLEDFVEALKSNLPSVLFDCIHVSILQILRQRLEYLSVEGSESASDCLRNLNWDFLDLVTWPLFMVE YFLVHCSSEKHGLDPSCLKLFKSDYYQQPVSVKVGMLRCLCDDMIEAEAIRAELNRRSSGAELELDFDRSVNLGSSRKRKAIVDLGRGSGLAEDAIDDTM DLNVDECCLCKMDGNLICCDGCPAAYHSKCVGVANDSLPEGDWYCPECAVDKPSVRHRKTLRGAEVLGVDPHGRIYFGSCGYLLVSDSSDSDSFSYYHRD DLHALIDALRSSYRFYRNIIEAISKNLDVPVRNLNTVHHLGKLLPSRSLASTVKENVNERKSEGTSSSCLFDASKSLSSTHISSEGSAETTQIGPVSQNF QKEGLDGSNQSADNCNDPEMKNSVEPKPGSDPHSSAVNTIPLTTYINHYSFGQSASRVAEDLMTKSSNKILDASAKSDEEMISAQMKIILKNTSKLRWPS IQSSKLMVQREKCGWCFMCRAPMDDLDCLFNMSFGPVKEVPVREVHELQLEKNRNGHLTDVIGQIIQIEERLQGLLLGPWVKPDYSTLWRENILKATDIS SVKCLLLKLESNVHQRAISTEWLKHIDSSAVVGSASHIVVNSKTAASKSAVGGRKRSKSAESEPGPSNATGGLRMLWWRGGKLSRKLFSWKVLPVNLASK AARQAGHTRIPGILYPENSDFAKRTKSVAWRAAVESSSTPELLALQVRELDSNIKWDEMENWHALSALDKEYKKSLRLFKKVIVRRKCSEGEGTKYLLDF GTRKSIPEVVMKNGSVVEESSNEKKRYWGSPVHAPLHMLKNFEEKRAARKSSKIVGLGKPSKEKNSLAKSSSEKKGFAYLFARSERSDLYQCGHCKKDVP SSEAVCCQSCQEFFHKRHARKSGSSNHAKCVYTCHHCFSGNRIKLGKKKAGKGSLKSTNKAQLSKSKKVAIVRRSVRLKRGSRKGLRGRPPRVKDDQKVT PPGRKGLRGRPPLVKDDQKAGKRPRGRPPLVKDGLTTPLKRPRGRPPKDTGNQTITPPRKSLRGRPPLVEKADDRKTTTPVMITYLRRSARQATTPQATS PQAPTAQSENREQLKLGNEFPLSQKKRSSTSHSYWLHGLRVSATSGEDERVVQFRKTRLVAASRSDIVDQQPKCSLCHESEYTSTSNYISCELCEVWFHG DAFGLNSGNIDSVIGFRCHLCRERSPPSCPFLDTLKSDEPQVVPEDVVAGSDNSEDADLGGGHDAHRMETDHHQDSNAAIDDS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12400			DNA binding;zinc ion binding;D...		Lus10027346 [exp]	0	1
AT3G06290		AtSAC3B	yeast Sac3 homolog B, SAC3/GAN...		Lus10012769 [exp]	1.4	0.9299
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Lus10027579 [exp]	3.5	0.9157
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Lus10003572 [exp]	5.2	0.9068
AT5G56930	C3HZnF	EMB1789	embryo defective 1789, CCCH-ty...		Lus10028950 [exp]	7.3	0.8974
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Lus10042159 [exp]	8.0	0.8856
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Lus10004250 [exp]	8.4	0.8837
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10032181 [exp]	8.9	0.9013
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040891 [exp]	9.2	0.8951
AT2G16950		ATTRN1	transportin 1 (.1.2)		Lus10023999 [exp]	9.2	0.8812
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10032614 [exp]	9.4	0.8640

Compare expression of checked genes

Lus10027346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.