Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31540 235 / 9e-68 ATEXO70G1 exocyst subunit exo70 family protein G1 (.1) AT1G51640 166 / 2e-43 ATEXO70G2 exocyst subunit exo70 family protein G2 (.1) AT5G03540 156 / 1e-40 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT5G52340 157 / 2e-40 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1) AT5G50380 145 / 4e-36 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT5G52350 133 / 2e-32 ATEXO70A3 exocyst subunit exo70 family protein A3 (.1) AT1G72470 124 / 2e-29 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT3G14090 123 / 3e-29 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G54090 122 / 7e-29 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT3G29400 119 / 1e-27 ATEXO70E1 exocyst subunit exo70 family protein E1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014917 [exp] 1275 / 0 AT4G31540 242 / 4e-70 exocyst subunit exo70 family protein G1 (.1) Lus10007751 [exp] 1036 / 0 AT4G31540 239 / 8e-69 exocyst subunit exo70 family protein G1 (.1) Lus10018672 [exp] 988 / 0 AT4G31540 231 / 3e-66 exocyst subunit exo70 family protein G1 (.1) Lus10026230 [exp] 246 / 2e-71 AT4G31540 1045 / 0.0 exocyst subunit exo70 family protein G1 (.1) Lus10042439 [exp] 243 / 1e-70 AT4G31540 1034 / 0.0 exocyst subunit exo70 family protein G1 (.1) Lus10037329 [exp] 162 / 5e-42 AT4G31540 627 / 0.0 exocyst subunit exo70 family protein G1 (.1) Lus10021283 [exp] 158 / 2e-40 AT5G52340 995 / 0.0 exocyst subunit exo70 family protein A2 (.1) Lus10043432 [exp] 145 / 2e-36 AT5G03540 1004 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10034151 [exp] 131 / 1e-31 AT5G03540 991 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G015500 [exp] 887 / 0 AT4G31540 250 / 4e-73 exocyst subunit exo70 family protein G1 (.1) Potri.006G272900 [exp] 232 / 1e-66 AT4G31540 1010 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.018G008400 [exp] 230 / 6e-66 AT4G31540 971 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.010G250500 [exp] 192 / 3e-52 AT4G31540 731 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.008G008700 [exp] 179 / 1e-47 AT4G31540 716 / 0.0 exocyst subunit exo70 family protein G1 (.1) Potri.016G071000 [exp] 161 / 8e-42 AT5G52340 1021 / 0.0 exocyst subunit exo70 family protein A2 (.1) Potri.006G203900 [exp] 155 / 1e-39 AT5G52340 988 / 0.0 exocyst subunit exo70 family protein A2 (.1) Potri.008G017800 [exp] 151 / 2e-38 AT5G03540 960 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.010G241800 [exp] 147 / 4e-37 AT5G03540 988 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.015G058200 [exp] 140 / 9e-35 AT5G61010 585 / 0.0 exocyst subunit exo70 family protein E2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10027347 pacid=23145580 polypeptide=Lus10027347 locus=Lus10027347.g ID=Lus10027347.BGIv1.0 annot-version=v1.0 ATGACGACGGCCGTAGATCATTTATCCGTCGCCGCCAACCTGGAGTCAACATGTTCCGATCTCCGGAGCCTCCTCCATACGTCGTCAAAGATGGAGTCCA CCCTCCTGAAGATGGAGAACCGGTTTGAAACCATGGACGAGAGCCTTGAAACAACCGCCAGGAGAATCGCTCCTCTCCAATCACTAGCAATGGCCGCCAA AGCTCTCGACACGAGGATCAATCGAGCCGTCTCCCCTGCTTTCTCCGTCCTAGACTGGTTCGCCCGCTGCGAGTCCCTTCAGCGAAGGCTGACTCACCTC TCCGAGCCGGAGAAGAACAATCATCATAGGCGGCAGCGGCTGAGGCGGCTGCTCGACTACGTCGAGTGCGTCGACGAGCTGAATTCGACGATCGATGCGA TCAGCCAAGACGGAGAACCGGCGATCCAGAAGCTGCAGGAAGTGGTGGAGTTTCTGAGGAGGACGAAGGCGACCGATCATTTCAGATCGCATCGGTTGAG GGAAACCTTGATTGCTCTCAAGTTGCTATACGAGACGGAAGTCGATGGAATGAGATTCGAAGGAGTTCTCGATCAAGCTTTGCTTAATTTGCAGGATGAG TACGAATCGATTCTTCAGCAGCTTACCCATCAGGATTTAGGGGAATTCGATCAGGATCTCGGTACGGATCTGGAGATTCAAATCCTGAAGCGGATATCCG AAATCCTCTGTTCTAACGACTGTTTGGACATCTGCATCGACATCTTCGTGAAAGTTCGGTACAAGAGATCGGCGAAGGCGTTGATGAAGCTGAATCCGGA TTATCTCAGAACGTACTCGCCGGAAGAGATGGATGAAATCGAGTGGGAGAAATTGGAAACCGCGATAAGCTTATGGATTCAGCACTTCGAGGTAGCGTTG AAGACGGTCTTTATGCCGGAGAAGAATCTCTGCCGTCGGATTCTGGGAGGGATCCAGCTGGACGACGTCGGAGCGATTTGGATGGAGTGTTTTGTGAAAG TCGCCGATAAAATCATGGCGGTTTTCTTCCGATTCGGAGAAGGTGTAGCAAGGAGCAGTAAAGAGCCGCAGAAACTGTTCAAGCTTTTGGATATGTTCGA TTCGTTGGAGAAGATCAGCGGCGAGTTCACGGCGATTTTCGAAGGGGAAGCTGGATTGGATATCTGTACAAGATACAGAGAGCTTGAGAAGCTTCTTGTT CATTCGTCGAGTAAAGTGTTCTGGGAATTCGGACTCCAAATCGAAGGACACTCCGACGGGTTCCCTCCGCCGCAGGATGGATCCGTTTCGAAACTCGTGA GGTACGCGATTAACTACCTCAAATACCTAGCCACAGATGCTTACAGCATTCCGATGGCGAAAGTCCTCCGAACGGAGCAAATGTGGAAAGCCGGAGTTCT GTCAAGACCCGACTCCGACGAAACTCTGCTCAAGGAAGCAATCACCAACATCGTCGAAGCTCTGCAGCGGAATGTCGAGTCGAAGAGGTCTCGGTACAAG GACAAAGTGCTGCCGCAAGTCTTCGCCATGAATACTTACTGGTACATCTACATGAGGACTCGGAACACCGAGCTAGGGAAGCTGCTAGGGGAGCAATACA TGAAGCAGAGGTACAAATTCGTGGCGGAGGAATCGGCTTATCTTTACCAGAAGCAGGCGTGGGGCCCGCTGGTGAGACTGCTTGAGCCAGCGGCGGCGAA GGAGGAGGGGGAGGATGGTTCCGTTTCCGTGGTGGAAGGGTTTTTGAAAGCGTTGGAGGAGGTGGCGGAGCGGCACATGACGCTATACACAATCCCCGAC GTCGTTTTGAGGGAGCAGATCCGAGAGGCGACGGTGAAGGTTGTCGTTCCGGCGTACTCTGATTTTGTGAACGAGCAGGGGAGGAAGTTTCCGGGTCCGG AGTCGGTTAAGGCGATGGTGTGTCGGATTTTTAACAATGGTGAACAGTACCCGGTGACTTCCGGAGAAAGGAAGTTGCGGCGGCGGGATTCAGAAAACCG ATCGCCGGCGGATAGTTCGGTTGGGTCTGTTGATTATCAGAGTAGACGATCTGGATCCATTGGATCGTCTCCTAGTGACCGGTTAGACGGTTGA
AA sequence Show only first row Show all	>Lus10027347 pacid=23145580 polypeptide=Lus10027347 locus=Lus10027347.g ID=Lus10027347.BGIv1.0 annot-version=v1.0 MTTAVDHLSVAANLESTCSDLRSLLHTSSKMESTLLKMENRFETMDESLETTARRIAPLQSLAMAAKALDTRINRAVSPAFSVLDWFARCESLQRRLTHL SEPEKNNHHRRQRLRRLLDYVECVDELNSTIDAISQDGEPAIQKLQEVVEFLRRTKATDHFRSHRLRETLIALKLLYETEVDGMRFEGVLDQALLNLQDE YESILQQLTHQDLGEFDQDLGTDLEIQILKRISEILCSNDCLDICIDIFVKVRYKRSAKALMKLNPDYLRTYSPEEMDEIEWEKLETAISLWIQHFEVAL KTVFMPEKNLCRRILGGIQLDDVGAIWMECFVKVADKIMAVFFRFGEGVARSSKEPQKLFKLLDMFDSLEKISGEFTAIFEGEAGLDICTRYRELEKLLV HSSSKVFWEFGLQIEGHSDGFPPPQDGSVSKLVRYAINYLKYLATDAYSIPMAKVLRTEQMWKAGVLSRPDSDETLLKEAITNIVEALQRNVESKRSRYK DKVLPQVFAMNTYWYIYMRTRNTELGKLLGEQYMKQRYKFVAEESAYLYQKQAWGPLVRLLEPAAAKEEGEDGSVSVVEGFLKALEEVAERHMTLYTIPD VVLREQIREATVKVVVPAYSDFVNEQGRKFPGPESVKAMVCRIFNNGEQYPVTSGERKLRRRDSENRSPADSSVGSVDYQSRRSGSIGSSPSDRLDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10027347 [exp]	0	1
AT1G61260			Protein of unknown function (D...		Lus10020090 [exp]	1.4	0.8868
AT4G23030			MATE efflux family protein (.1...		Lus10017836 [exp]	5.7	0.8710
AT1G71910			unknown protein		Lus10016934 [exp]	6.0	0.8786
AT2G19500		ATCKX2, CKX2	cytokinin oxidase 2 (.1)		Lus10031200 [exp]	6.7	0.8754
AT5G51500			Plant invertase/pectin methyle...		Lus10031140 [exp]	8.4	0.8809
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10009969 [exp]	12.3	0.8785
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10038028 [exp]	13.4	0.8751
AT2G23560		ATMES7	ARABIDOPSIS THALIANA METHYL ES...		Lus10000840 [exp]	13.6	0.8155
					Lus10007078 [exp]	21.6	0.7613
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10016105 [exp]	23.9	0.8589

Compare expression of checked genes

Lus10027347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.