Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24820 667 / 0 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1), 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.2) AT3G61140 81 / 1e-16 EMB78, CSN1, COP11, ATFUS6, FUS6, ATSK31 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014789 [exp] 721 / 0 AT4G24820 691 / 0.0 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1), 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.2) Lus10017932 [exp] 694 / 0 AT4G24820 660 / 0.0 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1), 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.2) Lus10014916 [exp] 684 / 0 AT4G24820 619 / 0.0 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1), 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G090900 [exp] 701 / 0 AT4G24820 671 / 0.0 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1), 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.2) Potri.012G093500 [exp] 697 / 0 AT4G24820 680 / 0.0 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1), 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF10602 [flax] [poplar] RPN7 26S proteasome subunit RPN7 CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10027348 pacid=23145444 polypeptide=Lus10027348 locus=Lus10027348.g ID=Lus10027348.BGIv1.0 annot-version=v1.0 ATGGATTTCCCTGAGGGAGCTCAGCAGCCGCATCTGGTTCTAGCTAACAAGCTCTTCCTCCTGACCCACCCGGATGTCCAGGATATCGAGAAGGTCCGCA TCAAGGAGGAGGTTTTAGATACCATCAAAACCCACGATATGGCGCCTTTGTTTGAAACGCTGGTAGCTGAGTCATTGCTCGATAAGGATCAGACCCTCTT GGATCCAATGCGGGCTAAGATCGAGGAGGAGCTGAAGAAGCTCGATGAAAAGATTGCAGATGCAGAAGAAAACTTGGGCGAAAGTGAAGTTAGAGAAGCT CATCTAGCAAAATCCTTGTTCTACATTCGTATTGGCGACAAGGAGAAAGCATTGGAGCAACTCAAAGTAACCGAAAGCAAAACGGTCGCAGTTGGACAAA AGATGGACTTGGTATTCTACACCTTGCAACTCGGTTTCTTCTACATGGATTTCGATCTCATCTCTAAGAGCATTGACAAGGCAAAGAACTTGTTCGAAGA GGGAGGTGACTGGGAGAGGAAAAACCGCCTGAAGGTGTACGAAGGCCTGTACTGCATGTCTACTCGCAATTTCAAGAAGGCAGCCGATTTGTTTCTGGAT TCTATCTCGACCTTCACCACATACGAGATTTTCCCCTATGACACTTTCATATTCTACACCGTTCTGACAAGCATCATATCCTTGGATAGAGTGTCTCTTA AGCAGAAGGTTGTGGATGCGCCTGAAATCCTGGCTGTTATAGGAAAGATCCCACATCTCTCGGAGTTTCTTAACTCGCTCTACGATTGCCAGTACAAGTC TTTCTTCTCCGCTTTCGCTGGCTTGACCGAGCAGATAAAGTTAGACCGGTATTTGTACCCGCATTTCCGGTACTACATGAGGGAGGTGAGAACGGTGGTG TACTCCCAGTTCCTCGAGTCCTACAAGAGTGTAACAATCGAGGCAATGGCGAAGGCATTCGGCGTGACAGTGGATTTCATCGATCTGGAGTTGTCAAGGT TCATTGCAGCGGGGAAACTACACTGCAAGATCGATAAAGTAGCTGGGGTTCTTGAAACGAACCGTCCTGATGCGAAGAACGCTCTTTACCAGGCAACGAT CAAGCAAGGGGACTTCTTGCTGAACAGGATTCAGAAGCTGTCCCGGGTGATCGACTTGTAG
AA sequence Show only first row Show all	>Lus10027348 pacid=23145444 polypeptide=Lus10027348 locus=Lus10027348.g ID=Lus10027348.BGIv1.0 annot-version=v1.0 MDFPEGAQQPHLVLANKLFLLTHPDVQDIEKVRIKEEVLDTIKTHDMAPLFETLVAESLLDKDQTLLDPMRAKIEEELKKLDEKIADAEENLGESEVREA HLAKSLFYIRIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKNLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAADLFLD SISTFTTYEIFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILAVIGKIPHLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVV YSQFLESYKSVTIEAMAKAFGVTVDFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24820			26S proteasome, regulatory sub...		Lus10027348 [exp]	0	1
AT3G02530			TCP-1/cpn60 chaperonin family ...		Lus10033546 [exp]	2.8	0.8514
AT2G39990		AteIF3f, EIF2	Arabidopsis thaliana eukaryoti...		Lus10028272 [exp]	3.0	0.8492
AT5G35520		MIS12, ATMIS12	MIS12 HOMOLOGUE, ARABIDOPSIS M...		Lus10009016 [exp]	3.5	0.8524
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Lus10041189 [exp]	4.6	0.8343
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10041029 [exp]	12.8	0.8393
AT3G25980		MAD2	MITOTIC ARREST-DEFICIENT 2, DN...		Lus10006436 [exp]	14.8	0.8432
AT1G61000			unknown protein		Lus10012690 [exp]	16.4	0.8308
AT1G77580			Plant protein of unknown funct...		Lus10042719 [exp]	18.7	0.8315
AT5G42970		FUS4, EMB134, C...	FUSCA 8, FUSCA 4, EMBRYO DEFEC...		Lus10007164 [exp]	19.9	0.8034
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Lus10035522 [exp]	22.2	0.7760

Compare expression of checked genes

Lus10027348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.