Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50450 564 / 0 Saccharopine dehydrogenase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014913 [exp] 773 / 0 AT1G50450 609 / 0.0 Saccharopine dehydrogenase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G050100 [exp] 624 / 0 AT1G50450 607 / 0.0 Saccharopine dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03435 [flax] [poplar] Sacchrp_dh_NADP Saccharopine dehydrogenase NADP binding domain
Representative CDS sequence Show only first row Show all	>Lus10027349 pacid=23145573 polypeptide=Lus10027349 locus=Lus10027349.g ID=Lus10027349.BGIv1.0 annot-version=v1.0 ATGGCGGGAGCATTGCTGGGAAGATTCGCCATTACTGCGTGCTTGAAAGAGAACCCGACTAGCAATGGAGACGAGAAGTTGAAAGGGAAGAAGGTTCTGG TTCTGGGCGGAACGGGCCGGGTCGGAGGATCCACCGCCATTGCTCTTTCCAAGCTATGCCCTCACCTTTCAATCGCCATTGGTGGCCGGAACAGGGAAAA GGGTGAATCAATGGTGGATACTTTGGGGAAGAAGAACTCTTCATTTGTTGAGGTTGATATTGACAATGTGGACTCATTGGAAGCGGCTGTGAAAGGTGTG GATCTCGTGGTTCATGCTGCTGGCCCATTCCAGCAGACTGACAAATGCCCTGTGCTTGAAATGGCTATAGAGACCAAGACTGCATATGTCGACGTTTGTG ATGACACTAGCTATGCTCTTCGAGCTAAATCGTTCAAGGATAGAGCAGTGGCTGCAAACATTCCTGCAGTAACGACTGCTGGAATCTATCCAGGAGTGAG CAATTTGATGGCAGCAGAGCTTGTTCGAGTTGCGAGAAGTAAGAACGATCAAGAGCCTGAGAGGCTAAGGTTTTACTACTACACAGCAGGAAGTGGAGGT GCCGGTCCAACTATCTTAGCCACCAGTTTCTTACTTCTTGGTGAAGATGTTGTTGCATACAATAAAGGAGAAAAGATCAGGCTAAAGCCATATAGTGGGA TGATGAGCATCGATTTCGGGAAGGGAATCGGAAGCAGAGATGTTTATCTGCTAAATTTACCAGAGGTGCACAGTGCTCATGAGGTCTTGGGAATACCAAC TGTGAGTGCTCGATTCGGAACTGCACCTTTCTTCTGGAATTGGGGAATGGAAATCATGACAAATCTTCTTCCTCAGGAAGTCCTGAAGGACAGAAGCAAA GTACAAGAAATGGTGCAGTTGTTCGATCCTATTGTTCGTGCAGTTGATGGTTTTGCTGGAGAGCGCGTCGCAATGAGAGTTGACTTGAAGTGCACGGATG GACGTGACACCCTTGGCTTGTTTAGCCACAAGAGCCTCTCTGTATGTGTGGGAACAGCAACAGCAGCTTTCGCGCTAGCAGTGCTCGAGGGAAGCACTCA GCCGGGAGTTTGGTTTCCGGAAGAGCCGGAAGGCATTGCATTAGAGGCAAGGGAATTGCTGCTGAAGAGAGCTGCAGATGGCGCCATGAGTTTCGTGATG AACAAGCCGCCTTGGATGGTGGAAACGAACCCTAAAGAGGTCGGGTTGGGAATCTATGTATGA
AA sequence Show only first row Show all	>Lus10027349 pacid=23145573 polypeptide=Lus10027349 locus=Lus10027349.g ID=Lus10027349.BGIv1.0 annot-version=v1.0 MAGALLGRFAITACLKENPTSNGDEKLKGKKVLVLGGTGRVGGSTAIALSKLCPHLSIAIGGRNREKGESMVDTLGKKNSSFVEVDIDNVDSLEAAVKGV DLVVHAAGPFQQTDKCPVLEMAIETKTAYVDVCDDTSYALRAKSFKDRAVAANIPAVTTAGIYPGVSNLMAAELVRVARSKNDQEPERLRFYYYTAGSGG AGPTILATSFLLLGEDVVAYNKGEKIRLKPYSGMMSIDFGKGIGSRDVYLLNLPEVHSAHEVLGIPTVSARFGTAPFFWNWGMEIMTNLLPQEVLKDRSK VQEMVQLFDPIVRAVDGFAGERVAMRVDLKCTDGRDTLGLFSHKSLSVCVGTATAAFALAVLEGSTQPGVWFPEEPEGIALEARELLLKRAADGAMSFVM NKPPWMVETNPKEVGLGIYV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50450			Saccharopine dehydrogenase (....		Lus10027349 [exp]	0	1
AT1G50450			Saccharopine dehydrogenase (....		Lus10014913 [exp]	1.4	0.9411
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Lus10022640 [exp]	2.8	0.9460
AT5G25880		ATNADP-ME3	Arabidopsis thaliana NADP-mali...		Lus10006037 [exp]	3.3	0.9186
AT2G21280		GC1, ATSULA	GIANT CHLOROPLAST 1, NAD(P)-bi...		Lus10018055 [exp]	3.5	0.9298
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10029841 [exp]	3.9	0.9293
AT4G15110		CYP97B3	"cytochrome P450, family 97, s...		Lus10039040 [exp]	4.2	0.9384
AT5G08050			Protein of unknown function (D...		Lus10040515 [exp]	7.5	0.9167
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Lus10043252 [exp]	7.7	0.9291
AT2G32500			Stress responsive alpha-beta b...		Lus10015134 [exp]	8.5	0.9223
AT2G34860		EDA3	embryo sac development arrest ...		Lus10024221 [exp]	9.2	0.9282

Compare expression of checked genes

Lus10027349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.