Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21100 297 / 1e-93 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G12440 262 / 6e-80 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3) AT1G51520 222 / 5e-67 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G51950 154 / 7e-41 C3HZnF Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) AT3G63450 135 / 5e-35 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT2G05160 100 / 2e-22 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) AT1G51530 84 / 3e-17 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G52980 0 / 1 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014915 [exp] 833 / 0 AT3G21100 384 / 7e-127 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10019042 [exp] 494 / 3e-170 AT3G21100 368 / 6e-120 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10005023 [exp] 491 / 1e-169 AT3G21100 380 / 4e-125 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10005319 [exp] 225 / 1e-66 AT3G51950 420 / 2e-141 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10039575 [exp] 225 / 1e-66 AT3G51950 427 / 3e-144 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10019044 [exp] 223 / 3e-65 AT3G51950 341 / 4e-110 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10027351 [exp] 192 / 3e-57 AT3G21100 235 / 6e-77 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10014914 [exp] 147 / 9e-39 AT5G12440 151 / 4e-42 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3) Lus10009964 [exp] 116 / 4e-28 AT3G51950 215 / 3e-64 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G050600 [exp] 416 / 4e-139 AT3G21100 360 / 4e-116 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G255400 [exp] 385 / 7e-127 AT3G21100 338 / 2e-107 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G050700 [exp] 276 / 5e-85 AT3G51950 362 / 4e-117 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.003G204300 [exp] 273 / 1e-83 AT3G51950 342 / 1e-109 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G255532 [exp] 253 / 3e-76 AT3G51950 347 / 8e-112 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G020300 [exp] 233 / 2e-68 AT3G51950 330 / 1e-104 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.014G165500 [exp] 110 / 2e-25 AT2G05160 513 / 8e-178 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.002G221100 [exp] 104 / 1e-23 AT2G05160 469 / 1e-160 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.001G276300 [exp] 81 / 3e-17 AT5G12440 80 / 3e-17 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027350 pacid=23145579 polypeptide=Lus10027350 locus=Lus10027350.g ID=Lus10027350.BGIv1.0 annot-version=v1.0 ATGGCGGCCATGGATCCTTACGAGACGACGAACTTACTCCTCTCAAAGATCAAGTCCATAGACCCAGAACACGCCTCCAAAATCATGGGCTACATCCTCA TCCACGACCTCGGAGACCGTGATTTGGCTAGGTTAGCTCTAGGACACGAGACAATCTTGCTCTCCGTCATTTCCAAGGCCAAAGCTCAGCTGGGACTTCC GTCGAACACCTTGCCTGTGCCCTCTCACTTCCACAATAACCCCATCTCCAGACCCGTTGGTAGTGGTAACCCGTTCCCTCATTCTCCTACTGATTTTTCC AGGAACCCTTCTCCCCATTCATGGCCGGTCTCCGGTGGCAGCTCCTTCAGTCCGAGGTCGTTCAATGAGGCTGCTTTTTCCAAGTCTGTTGGTAGCAATG GTGGTGGGGATTGTTCGAGTTCAAGTAATGCTGGTGCTGATGCTCTTGAAGATTACCCTTTCGACGAGTATCTTTCCTTTCTCGACGATTCTTCCTCGTC CAGGAACGAGGAATTACTTGTTGACCCGTTTTCGGATGTAAATGGTGGTGATGCTAGCTTTCACCGGAGGAGGTTTTCTGAAAGTGATGCATGTGGTGAT AATACTGAAGATGTGGAGTTTGGAAATGGATTTAGACCATCAAGTTTTAATGGTCGGGTTATGGTGGGTTCACCCAGGGAAATGGAGAGTCTCCTCTTGC AGCAACGTGAAGGGATGATGAGGTTGAAAGCCGCTCATCAGCAACAGCAGCAGAGACTGGCATACAACAAGTACATGAACTTCTTGTTGCAGCAGCAGAA TGATCAACAGAGACTCGGAGCTGAGGACTTTCACAAGTTCGGCCGGTTCTGTCCAGAAAGGAATGAAATTTTCTACAAACAAATAGCGTTCAGTTGTTCA TGTGGTATGATGTTTTCCGAATACACTTTCGGTCCAGTTGAAGATGTCAGAATCCCATATCAGCAGAAGCGAATGTTCGGATTTGTTACGTTTCTCCATG CAGACACCGTGAAGCTTATATTGGCAAGAGGAAACCCTCATTTCATTTGCGATTCACGTGTGCTCGTCAAGCCATATAAGGAAAAAGGGAAAGCTGCAAA TGAGAGGCAACAACACCATCTGCATCATCAGGTAATGGACAGGGGGAATTTTTCACCGTGTTCAAGTCCGTCTGGTGTTGATGTCAGGGAGCTATATGAT CTTCCTATAGGTCCAAGAATGCCATACAATTCACAGGAACTAATGCTGAGAAGGAAGTTAGAGGAGCAAGCTGAGTTGCAGCAAGTCATTGAACTTCAAG GGCGGAGGTTAGTAAATCTGCAGCTTCCAGACATGCGAGGTGACTATGTGCAGCACCACCTCCAACGTAGCTTGTCCATTGGTGCGCCGATGTCTACTCA TTCTCCTCTCAGTCATAATATAGGCAACAGTGCCTTCGAAAGTGAGCCTATAACAGTTGAGCTTGTTGCAGTCCCGAGAGCAGTCTTGAACACGATGCTT CTCACACAAAGCCATCCAAGAACGAAGACCTTGACTGTCCTCGTGCTTCGACAGAAATAA
AA sequence Show only first row Show all	>Lus10027350 pacid=23145579 polypeptide=Lus10027350 locus=Lus10027350.g ID=Lus10027350.BGIv1.0 annot-version=v1.0 MAAMDPYETTNLLLSKIKSIDPEHASKIMGYILIHDLGDRDLARLALGHETILLSVISKAKAQLGLPSNTLPVPSHFHNNPISRPVGSGNPFPHSPTDFS RNPSPHSWPVSGGSSFSPRSFNEAAFSKSVGSNGGGDCSSSSNAGADALEDYPFDEYLSFLDDSSSSRNEELLVDPFSDVNGGDASFHRRRFSESDACGD NTEDVEFGNGFRPSSFNGRVMVGSPREMESLLLQQREGMMRLKAAHQQQQQRLAYNKYMNFLLQQQNDQQRLGAEDFHKFGRFCPERNEIFYKQIAFSCS CGMMFSEYTFGPVEDVRIPYQQKRMFGFVTFLHADTVKLILARGNPHFICDSRVLVKPYKEKGKAANERQQHHLHHQVMDRGNFSPCSSPSGVDVRELYD LPIGPRMPYNSQELMLRRKLEEQAELQQVIELQGRRLVNLQLPDMRGDYVQHHLQRSLSIGAPMSTHSPLSHNIGNSAFESEPITVELVAVPRAVLNTML LTQSHPRTKTLTVLVLRQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10027350 [exp]	0	1
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10005023 [exp]	1.0	0.9760
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10014915 [exp]	1.4	0.9759
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10019757 [exp]	2.4	0.9642
AT1G77270			unknown protein		Lus10038311 [exp]	3.0	0.9297
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10019042 [exp]	4.2	0.9425
AT5G63960		EMB2780	DNA binding;nucleotide binding...		Lus10033513 [exp]	6.3	0.9456
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10016367 [exp]	6.9	0.9237
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10002748 [exp]	8.9	0.9328
AT1G63640			P-loop nucleoside triphosphate...		Lus10002007 [exp]	9.5	0.9363
					Lus10021271 [exp]	10.3	0.8760

Compare expression of checked genes

Lus10027350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.