Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21100 232 / 8e-76 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G12440 217 / 4e-66 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3) AT3G51950 207 / 2e-63 C3HZnF Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) AT3G63450 185 / 5e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT1G51520 180 / 3e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G05160 125 / 8e-33 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) AT1G51530 87 / 3e-19 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G17640 44 / 5e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G14300 44 / 7e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13224 44 / 7e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019044 [exp] 346 / 4e-116 AT3G51950 341 / 4e-110 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10014914 [exp] 280 / 2e-92 AT5G12440 151 / 4e-42 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3) Lus10005319 [exp] 265 / 5e-85 AT3G51950 420 / 2e-141 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10039575 [exp] 262 / 4e-84 AT3G51950 427 / 3e-144 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10014915 [exp] 236 / 5e-74 AT3G21100 384 / 7e-127 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10005023 [exp] 213 / 2e-65 AT3G21100 380 / 4e-125 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10019042 [exp] 213 / 6e-65 AT3G21100 368 / 6e-120 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10027350 [exp] 191 / 3e-57 AT3G21100 327 / 4e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10009964 [exp] 181 / 2e-54 AT3G51950 215 / 3e-64 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G204300 [exp] 292 / 3e-94 AT3G51950 342 / 1e-109 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G020300 [exp] 275 / 2e-87 AT3G51950 330 / 1e-104 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.009G050700 [exp] 262 / 6e-83 AT3G51950 362 / 4e-117 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G255400 [exp] 257 / 3e-81 AT3G21100 338 / 2e-107 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G050600 [exp] 241 / 2e-75 AT3G21100 360 / 4e-116 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G255532 [exp] 236 / 4e-73 AT3G51950 347 / 8e-112 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.014G165500 [exp] 150 / 1e-41 AT2G05160 513 / 8e-178 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.002G221100 [exp] 139 / 2e-37 AT2G05160 469 / 1e-160 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.014G161600 [exp] 42 / 0.0002 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G196500 [exp] 42 / 0.0003 AT1G17640 274 / 4e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10027351 pacid=23145462 polypeptide=Lus10027351 locus=Lus10027351.g ID=Lus10027351.BGIv1.0 annot-version=v1.0 ATGAGGTCAAAGTCCTCTGTTCAGCAGAAGTTAGCAGCTGCTCAGTTCATGGCAGCAGCAGCTGGTGGTGGCTCTAATTTCCCTTACATGAGAGCTGCCG CCGCCGGAAGCTTCTCGCCGTTGGGGGGTCCAAGTGCGCGGCAGATCTACTTGACTTTCCCGGCGGACAGTACGTTCAGAGAAGAGGATGTTTCCAACTA CTTCAGCATCTATGGACCAGTCCAAGATGTAAGAATCCCATACCAGCAGAAGAGAATGTTCGGGTTCGTCACTTTCCTTTACCCGGAGACAGTGAACCTC ATCTTGGCTAAAGGCAACCCTCACTTTGTCTGCGATTCTCGTGTCCTCGTCAAGCCTTACAAGGAGAAAGGCAAAATCCTCGAGAAGAAGCAGATGGAAA GAGGAGGAGAGTTTTCACCGTCGGCATGTTCTAGCCCAACTGGCCTTGATTCCAGAGACCCGTTTGATCTTCACCTTGGTAGTAGGATGTTCTACAACAC ACAGGAGATGCTGCTGAGGAAGAAGCTAGGGGAGCAAGCTGATCTGCAGCAAGCCATTGAACTCCACGGGAGAAGGCTAATGAGTCTACAGCTACTTGAC CTGAAGAACCATCACCGTCAGCAGCTTATCCATGGTCTTTCTAATGGGTCTCCCCTTTCATCCCCAAGAACTCCGGTCCTTTCTGCTCCTGAAGGTTTGG CAACATTTTCTATCATTGTTGTCAAAATTGTTCATGAGAGTCATTATGGATTAATCTTTTGGGTCTGCAGAGAATGGTGTTGGAGCTGTAGTTGGTCATG A
AA sequence Show only first row Show all	>Lus10027351 pacid=23145462 polypeptide=Lus10027351 locus=Lus10027351.g ID=Lus10027351.BGIv1.0 annot-version=v1.0 MRSKSSVQQKLAAAQFMAAAAGGGSNFPYMRAAAAGSFSPLGGPSARQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFLYPETVNL ILAKGNPHFVCDSRVLVKPYKEKGKILEKKQMERGGEFSPSACSSPTGLDSRDPFDLHLGSRMFYNTQEMLLRKKLGEQADLQQAIELHGRRLMSLQLLD LKNHHRQQLIHGLSNGSPLSSPRTPVLSAPEGLATFSIIVVKIVHESHYGLIFWVCREWCWSCSWS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10027351 [exp]	0	1
AT4G03415			Protein phosphatase 2C family ...		Lus10018570 [exp]	1.7	0.7961
AT4G25450		ABCB28, ATNAP8	ARABIDOPSIS THALIANA NON-INTRI...		Lus10038886 [exp]	3.5	0.7845
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10017548 [exp]	7.5	0.7426
AT3G13170		ATSPO11-1	Spo11/DNA topoisomerase VI, su...		Lus10016612 [exp]	11.3	0.7648
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Lus10006269 [exp]	16.1	0.7433
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10027617 [exp]	19.2	0.7137
AT1G27170			transmembrane receptors;ATP bi...		Lus10015453 [exp]	20.9	0.7296
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10009502 [exp]	23.2	0.7952
AT2G28130			unknown protein		Lus10021421 [exp]	24.2	0.7409
AT3G63290			2-oxoglutarate (2OG) and Fe(II...		Lus10014705 [exp]	27.1	0.6604

Compare expression of checked genes

Lus10027351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.