Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51460 661 / 0 ABCG13 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) AT1G51500 657 / 0 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT1G17840 497 / 8e-169 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT3G21090 444 / 3e-148 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT2G28070 323 / 3e-101 ABCG3 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) AT3G55130 231 / 6e-67 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1) AT3G55110 222 / 1e-63 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1) AT3G55100 220 / 3e-63 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT2G01320 220 / 1e-62 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT1G71960 213 / 1e-60 ATABCG25, ABCG25 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027354 [exp] 847 / 0 AT3G21090 868 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10000339 [exp] 816 / 0 AT1G51460 837 / 0.0 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) Lus10009960 [exp] 812 / 0 AT3G21090 855 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009959 [exp] 792 / 0 AT3G21090 860 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10000338 [exp] 553 / 0 AT3G21090 532 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10040644 [exp] 487 / 4e-165 AT1G17840 1120 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10023154 [exp] 423 / 4e-140 AT1G17840 613 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10018268 [exp] 358 / 3e-117 AT1G17840 849 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10009961 [exp] 362 / 1e-116 AT3G21090 971 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G051300 [exp] 793 / 0 AT3G21090 943 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255900 [exp] 764 / 0 AT3G21090 929 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.016G056700 [exp] 593 / 0 AT3G21090 739 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.017G155300 [exp] 528 / 0 AT1G17840 1174 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.018G152600 [exp] 521 / 5e-178 AT1G17840 1152 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.001G255800 [exp] 459 / 6e-154 AT3G21090 1038 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.017G051300 [exp] 454 / 2e-152 AT1G17840 611 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.001G311300 [exp] 453 / 6e-152 AT1G17840 617 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.001G312300 [exp] 453 / 6e-152 AT1G17840 624 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.009G051200 [exp] 448 / 1e-149 AT3G21090 1008 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10027353 pacid=23145356 polypeptide=Lus10027353 locus=Lus10027353.g ID=Lus10027353.BGIv1.0 annot-version=v1.0 ATGTACCTAGTGTGGAATGATCTAACAGTCTTGGTTCCGAATTTCGGCAACGGACCAACCAAGAGGTTGCTTGATGGGGTTAATGGGTATGCCGAGCCTG GGAAGATTAAGGCTATCATGGGTCCATCTGGGTCTGGGAAAACAACTCTTCTTGATGCACTAGCAGGTAGACTACCATCCAATGTTGTGATGACTGGAAA CATCTTACTTAACGGGAAGAAGAAAAGACTCGACTGCAGTGGTATGGGTTACGTGAGACAAGAACCAATACTGTTGGGAACTCTAACAGTGAGAGAAGCC ATAAGATGTGAAGCTCACCTTAGGCTTCCAAGCACAATGACAAAGAAAGAGATCGACGAGGTGGCAGAAGGAACAATAATGGAAATGGGTCTCCAAGACT GTGCAGATATAATTATAGGGAACTGGCATTTGAAGGGAGTTAGCGTGGGGGAGAAGAAAAGACTAAGCATTGCACTCCAGATACTTACTAAGCCAGAGCT CTTGTTTTTAGATGAACCTACCACTGGGCTCGACAGTGCCTCTGCATTCTTCGTGGTTCGAATTCTCAGGAACATTGCAGAAGATGGGAGGACTGTGGTG TCATCGATTCACCAGCCGAGTAGTGAGGTTTTCGCACTTTTCGATGAGCTTTGCTTGCTGTCTGGTGGGGAGACTGTCTATTCCGGAGAAGCAAAAATGG CAACACAGTTTTTTGCTGAGGCTGGATTCCCATGTCCGATCCGGAGGAACCCTTCTGACCATTTCCTACATTTCATCAATTCCGACTTCGACCAGATCAC AATGGCATTGATGAAATCTAAAAGGGATTTTAAGGGGCAGTTAGAAGATTTGACATACGTGCCTACATCAGAGGTGAAGGCAATGTTAGTCAAAGAATAT AAGCAATCCAACTATGCAGTAATGGAAAGACTGAGAATGAGGGAGATAATAGCTACTGGACGAAGCTCCTCGATCAGCGAACGAGGAGCCAGTATTGGGT TCATTTCAGGCTTTATGACATTCATGTCCATCGGAGGCTTTCCTTCCCTCATCGAGGAATTGAAGGTTTTCCATGAAGATAGAGCAAACAAGAGCTATGG TGTTGGGGTGTATATCCTATCGAACTTCCTCTCTTCTTTCCCTTATGTGGCGCTAATGTCGGTCTCGGCAGCGAGTATAACCTACTACATGGTGGAATTA AAACCCGAAATTTTATCATTCGTGTATGCCTGTCTCAACCTTATAAGCAGCATAGTAGCTGTTGAGAGCTGCATGATGAACATAGCTTTACTGGTCCCAA ACTACTTAATGGGAATCATCACGGGAGCTGGATATATCGGGATCCTAATACTGACTTCAGGTTGCTTTCGTTCTCTGCCCAATCTTCCTAAGTTCCCATG GCTCTACCCAATGTCTTATATCAACTATGCAGCGTGGGCACAAGAGGGAGCATACAAGAATGACATGATAGGGAAAGAATTCAATCCTCTAATACCTGGA GGGACGAAGATGAGAGGCGAAGTTTATTTGACAACTGTGCTTGGTTTCAACCTTGAATACTCCAAGTGGTGGGACTTAGCTGCAGTAGTAGCCATCGCAA TGGCTTTCAAACTTATCTTCTATGTCGTCTGCAAGTTCAAGGAGAGATGTCACCCTTTGTTAAAGGAGATTCAAGCCAAGAGGATGGTTCATCGTCTCAA GAAGAGGGCATCTTTTGCGAGGAATTTGACACTCCCTTGCAAGAGGCATCAAGTCCTTCATTCTGTGGCTTCTCAAGAGTGTCTATTCTCCCCAAACCAC TAG
AA sequence Show only first row Show all	>Lus10027353 pacid=23145356 polypeptide=Lus10027353 locus=Lus10027353.g ID=Lus10027353.BGIv1.0 annot-version=v1.0 MYLVWNDLTVLVPNFGNGPTKRLLDGVNGYAEPGKIKAIMGPSGSGKTTLLDALAGRLPSNVVMTGNILLNGKKKRLDCSGMGYVRQEPILLGTLTVREA IRCEAHLRLPSTMTKKEIDEVAEGTIMEMGLQDCADIIIGNWHLKGVSVGEKKRLSIALQILTKPELLFLDEPTTGLDSASAFFVVRILRNIAEDGRTVV SSIHQPSSEVFALFDELCLLSGGETVYSGEAKMATQFFAEAGFPCPIRRNPSDHFLHFINSDFDQITMALMKSKRDFKGQLEDLTYVPTSEVKAMLVKEY KQSNYAVMERLRMREIIATGRSSSISERGASIGFISGFMTFMSIGGFPSLIEELKVFHEDRANKSYGVGVYILSNFLSSFPYVALMSVSAASITYYMVEL KPEILSFVYACLNLISSIVAVESCMMNIALLVPNYLMGIITGAGYIGILILTSGCFRSLPNLPKFPWLYPMSYINYAAWAQEGAYKNDMIGKEFNPLIPG GTKMRGEVYLTTVLGFNLEYSKWWDLAAVVAIAMAFKLIFYVVCKFKERCHPLLKEIQAKRMVHRLKKRASFARNLTLPCKRHQVLHSVASQECLFSPNH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10027353 [exp]	0	1
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10028354 [exp]	1.0	0.9292
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10028201 [exp]	4.2	0.9015
AT2G04845			Acyl-CoA N-acyltransferases (N...		Lus10006397 [exp]	7.5	0.8703
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10018138 [exp]	7.6	0.9066
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10001922 [exp]	8.8	0.8917
AT5G55490		GEX1, ATGEX1	gamete expressed protein 1 (.1...		Lus10002182 [exp]	9.5	0.8577
AT2G02000		GAD3	glutamate decarboxylase 3 (.1)		Lus10009116 [exp]	10.8	0.8853
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Lus10028203 [exp]	10.8	0.9004
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001010 [exp]	11.5	0.8871
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10016715 [exp]	12.0	0.8861

Compare expression of checked genes

Lus10027353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.