Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21090 868 / 0 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT1G51460 850 / 0 ABCG13 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) AT1G51500 829 / 0 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT1G17840 635 / 0 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT2G28070 358 / 1e-113 ABCG3 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) AT2G01320 281 / 3e-84 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT3G55130 247 / 1e-71 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1) AT3G55090 244 / 1e-70 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT2G39350 243 / 5e-70 ABCG1 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) AT2G37360 239 / 2e-68 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009960 [exp] 1050 / 0 AT3G21090 855 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10000339 [exp] 1020 / 0 AT1G51460 837 / 0.0 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) Lus10009959 [exp] 967 / 0 AT3G21090 860 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10027353 [exp] 847 / 0 AT3G21090 661 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009961 [exp] 814 / 0 AT3G21090 971 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10031063 [exp] 600 / 0 AT3G21090 659 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10040644 [exp] 599 / 0 AT1G17840 1120 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10035445 [exp] 599 / 0 AT3G21090 667 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10023154 [exp] 516 / 7e-175 AT1G17840 613 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G051300 [exp] 1009 / 0 AT3G21090 943 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255900 [exp] 984 / 0 AT3G21090 929 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.009G051200 [exp] 894 / 0 AT3G21090 1008 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255800 [exp] 881 / 0 AT3G21090 1038 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.016G056600 [exp] 721 / 0 AT3G21090 744 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.016G056700 [exp] 699 / 0 AT3G21090 739 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.017G155300 [exp] 667 / 0 AT1G17840 1174 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.018G152600 [exp] 659 / 0 AT1G17840 1152 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073050 [exp] 580 / 0 AT1G17840 659 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073100 [exp] 579 / 0 AT1G17840 661 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10027354 pacid=23145432 polypeptide=Lus10027354 locus=Lus10027354.g ID=Lus10027354.BGIv1.0 annot-version=v1.0 ATGGAGATCGAGCAAATTGTCTCTGGTGAAGGAAATGGTACTAATATGACTGGAAGTTGCAATGCCAAGGGGTGTGCATCAAGAAGCAGAGATGAAGCAG GAGCTACTTACCTACTGTGGGAAGATTTAACAGTGGTGCTCCCGAATTTGGGCGATGGACCTACAAGGAGATTGCTCGATAGGCTCCATGGATATGCTGA GCCAGGCAGGATTAAGGCTATCATGGGTCCATCTGGGTCTGGGAAAACAACTCTTCTTGATGCTTTGGCAGGAAGACTACCAGGGAATGTCGTCATGTCC GGGAATGTCCTACTTAATGGGAACAAGAAGAGACTCAATTACAGTGGTGTAGGTTATGTAAGACAAGAAAACAGGCTGCTGGGCACTCTGACTGTAAGAG AAACGATAAAATATTCAGCTCATTTGAGGCTCCCAAGCACAAAGACAAAAGAAGAAATCGATGACACTGCAGAAGCAACTTTAGCGGAAATGGGTCTCCA AGATTGTGCAGATCGATTTATAGGCAATTGGCATCTAAGGGGTATTAGCGGCGGGGAGAAGAAAAGACTAAGCATTGCACTTGAAACCCTCACTAAACCT CAGCTTCTATTCCTAGATGAACCTACCACTGGCCTAGACAGTGCCTCGGCTTTCTTTATCGTCCAAACCTTAAGAAACATTGCAGAAGATGGAAGAACCA TCATAGCTTCGATTCACCAGCCAAGCAGTGAGGTTTTTGCACTGTTTGATGACCTTTACTTGTTATCGGGTGGTGGGACTGTCTACTCTGGAGAAGCAAA AGAAGCAGCAAAGTTCTTTGATCAAGCTGGATTCCCTTGTCCAATTCGGAGAAATCCTTCCGATCATTTCCTACGCTGCATCAATTCAGACTTCGACCAG ATTGCACTGCCCTTGATGGGATCTAAAAGGGACATTGAGAAACCATTAGAATCTTTCAACCACTTACCCACAACAGAGATCAAGGCAATGCTAATCAAGG AGTACAGGCAATCCAACTATGCAGTCAATGAAAACGACAGAATGAAGAACATTCTGGCTACAAAGGGAACAGTGATTAAAAGGAAACTGAAAAATAAAGT GATTTGGTGGAAGCAACTCTGCACATTGACCCAGAGATCTTATGTGAACATGTGGAGGGATTTGGGCTACTACTGGGTGAGGATGGGAATCTATATAGCC TTGTCGATATGTATTGGTACCATCTTCTTCGACATTGGAAGAAGTGCTTCAATCTTCGGAAGAGGATCCTGTGACGGATTCATTGCAGGTTTCATGACAT TCATGTCCATTGGAGGCTTTCCTTCGTTCATTGAGGAATTGGAGGTTTTCCATGAAGAAAGACTGAACCGGCATTATGGAGTCGGGGTGTACATCCTATC AAACTACCTATCTTCTTTCCCTTTCTTGGCATTTATGTCACTCTCCACGGCAAGTATCACCTACTACATGATGAACTCCGGAGCTGGCTTTTCAGGTTTT GTGTACATCTGTCTCGACCTTTTAAGCAGTTTATCAGCAGTAGAGAGCTGCATGATGACCATAGCTTCACTTGTTCCCAACTACTTAATGGGAATCGTTT TCGGAGCGGGATATATTGGAATACTGCTGATGACTTCAGGATTCTTTCGTTTTCTGCCTGATCTTCCTAAGATTTTCTGGCGTTATCCAGTCTCTTACAT CAACTTCGCTGCATGGGGACTACAGGGTGCATACAAAAATGACTTGATTGGGCAAGAGTTTGACCCTTTAATACCTGGTGGGCCGAAGCTGAAAGGTGAT GTGTTCCTGACCACGGTGCTCGGTATTGACCTTGGATATTCAAAGTGGTGGGACTTAGCCGCAGTGATAGCCATTCTAATCACTTTCAGAGTTCTCTTTT ATGCCATCCTCAAGTTGAAGGAGAGATCTTTACCAGTGTTAAGGGAGATTTATGCCAAGAAAACGCTGCATCATCTCAAGAAGAGGCCATCTTTCAGGAA GAATTCGCATTCCCCTGAAAAGAAACATCAAGTCAATCAGTCTTTCTCTTTTCAAGAGGGTCTGCTTTCTCCAATGTACTAG
AA sequence Show only first row Show all	>Lus10027354 pacid=23145432 polypeptide=Lus10027354 locus=Lus10027354.g ID=Lus10027354.BGIv1.0 annot-version=v1.0 MEIEQIVSGEGNGTNMTGSCNAKGCASRSRDEAGATYLLWEDLTVVLPNLGDGPTRRLLDRLHGYAEPGRIKAIMGPSGSGKTTLLDALAGRLPGNVVMS GNVLLNGNKKRLNYSGVGYVRQENRLLGTLTVRETIKYSAHLRLPSTKTKEEIDDTAEATLAEMGLQDCADRFIGNWHLRGISGGEKKRLSIALETLTKP QLLFLDEPTTGLDSASAFFIVQTLRNIAEDGRTIIASIHQPSSEVFALFDDLYLLSGGGTVYSGEAKEAAKFFDQAGFPCPIRRNPSDHFLRCINSDFDQ IALPLMGSKRDIEKPLESFNHLPTTEIKAMLIKEYRQSNYAVNENDRMKNILATKGTVIKRKLKNKVIWWKQLCTLTQRSYVNMWRDLGYYWVRMGIYIA LSICIGTIFFDIGRSASIFGRGSCDGFIAGFMTFMSIGGFPSFIEELEVFHEERLNRHYGVGVYILSNYLSSFPFLAFMSLSTASITYYMMNSGAGFSGF VYICLDLLSSLSAVESCMMTIASLVPNYLMGIVFGAGYIGILLMTSGFFRFLPDLPKIFWRYPVSYINFAAWGLQGAYKNDLIGQEFDPLIPGGPKLKGD VFLTTVLGIDLGYSKWWDLAAVIAILITFRVLFYAILKLKERSLPVLREIYAKKTLHHLKKRPSFRKNSHSPEKKHQVNQSFSFQEGLLSPMY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10027354 [exp]	0	1
AT4G13340		LRX3	leucine-rich repeat/extensin 3...		Lus10037905 [exp]	2.4	0.8354
AT3G28630			Protein of unknown function (D...		Lus10015346 [exp]	4.6	0.8796
					Lus10007750 [exp]	12.0	0.8554
					Lus10021668 [exp]	15.2	0.8313
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10025280 [exp]	17.9	0.8657
AT3G28580			P-loop containing nucleoside t...		Lus10014497 [exp]	18.5	0.8310
					Lus10040954 [exp]	18.8	0.8725
AT4G36980			unknown protein		Lus10009350 [exp]	20.5	0.8285
AT2G44290			Bifunctional inhibitor/lipid-t...		Lus10033076 [exp]	24.9	0.8364
AT2G45910			U-box domain-containing protei...		Lus10018835 [exp]	28.5	0.8299

Compare expression of checked genes

Lus10027354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.