Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51450 387 / 2e-134 ASH2R, TRO ARABIDOPSIS Ash2 RELATIVE, TRAUCO (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014912 [exp] 426 / 6e-150 AT1G51450 456 / 1e-157 ARABIDOPSIS Ash2 RELATIVE, TRAUCO (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G256000 [exp] 419 / 2e-147 AT1G51450 417 / 4e-142 ARABIDOPSIS Ash2 RELATIVE, TRAUCO (.1) Potri.009G051400 [exp] 410 / 6e-144 AT1G51450 402 / 2e-136 ARABIDOPSIS Ash2 RELATIVE, TRAUCO (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00622 [flax] [poplar] SPRY SPRY domain
Representative CDS sequence Show only first row Show all	>Lus10027355 pacid=23145522 polypeptide=Lus10027355 locus=Lus10027355.g ID=Lus10027355.BGIv1.0 annot-version=v1.0 ATGAAAATCTGCTTGTCGAAGGTGTACAAGGCGGAGAAAGTTGAGCTGGGCGAGGACAGGATGAGTGCAGGGAGTACGAAGGGTTATAGAATGGTGAGAG CGACTAGAGGAGTTTGTGAAGGAGCTTGGTACTTTGAGATGAAGGTGGAGAACTTGGGAGAGACTGGGCATACACGACTAGGATGGTGTACTGAGAAAGG GGACTTGCAGGCGCCAGTTGGCTACGATGGGAACAGCTTTGGGTATAGAGATATTGATGGGAGTAAGATTCACAAGGCGTTGAGGGAAAAGTATGGGGAG GAAGGGTACAAAGAAGGGGATGTTATTGGATTCTATATTAGCTTGCCGGATGGGGAGGCATTTGCTCCCAAACCACCTCGTTTGGTTTGGTATAAAGGCC AGAGGTATCTCTGTGCTCCTGACGCCAAGGAGGATCCTCCTAAGATTATACCAGGAAGTGAGATATCATTTTTCAAAAATGGTGTATGTCAAGGGGTTGC ATTCAAGGATTTATATGGCGGGCGCTACTACCCTGCTGCATCAATGTACACACTTCCCAGTCAACCAAATTGTCTTGTCAAGTTTAATTTTGGTCCAGAC TTCTATTTTTTCCCGGCAGATTTTGGTGAGCGTCCCGTGCCAAGGCCCATGATTGAAGTTCCTTATCATGGATTTGATGCTCGTGTTGAGAATGGCATGC CCGATGAGAAGAAACCGTAG
AA sequence Show only first row Show all	>Lus10027355 pacid=23145522 polypeptide=Lus10027355 locus=Lus10027355.g ID=Lus10027355.BGIv1.0 annot-version=v1.0 MKICLSKVYKAEKVELGEDRMSAGSTKGYRMVRATRGVCEGAWYFEMKVENLGETGHTRLGWCTEKGDLQAPVGYDGNSFGYRDIDGSKIHKALREKYGE EGYKEGDVIGFYISLPDGEAFAPKPPRLVWYKGQRYLCAPDAKEDPPKIIPGSEISFFKNGVCQGVAFKDLYGGRYYPAASMYTLPSQPNCLVKFNFGPD FYFFPADFGERPVPRPMIEVPYHGFDARVENGMPDEKKP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51450		ASH2R, TRO	ARABIDOPSIS Ash2 RELATIVE, TRA...		Lus10027355 [exp]	0	1
AT4G12340			copper ion binding (.1)		Lus10032225 [exp]	2.6	0.8657
AT1G24270			unknown protein		Lus10003131 [exp]	3.2	0.8243
AT4G17060		FIP2	FRIGIDA interacting protein 2 ...		Lus10001004 [exp]	3.5	0.8602
AT5G58020			unknown protein		Lus10035833 [exp]	6.6	0.8601
AT1G15710			prephenate dehydrogenase famil...		Lus10023121 [exp]	6.8	0.8602
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035215 [exp]	9.4	0.8237
AT4G26670			Mitochondrial import inner mem...		Lus10032577 [exp]	9.4	0.7971
AT2G17265		DMR1, HSK	DOWNY MILDEW RESISTANT 1, homo...		Lus10001387 [exp]	9.5	0.8478
AT4G26500		SUFE1, EMB1374,...	SULFUR E 1, MBRYO DEFECTIVE 13...		Lus10032905 [exp]	12.5	0.8233
AT2G45260			Plant protein of unknown funct...		Lus10030291 [exp]	13.4	0.8418

Compare expression of checked genes

Lus10027355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.