Gene [FLAX] | FIBexDB

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	TAIR10 short description
AT5G12460	398 / 2e-135	Protein of unknown function (DUF604) (.1)
AT2G37730	310 / 8e-100	Protein of unknown function (DUF604) (.1)
AT4G15240	281 / 3e-89	Protein of unknown function (DUF604) (.1)
AT4G23490	269 / 3e-84	Protein of unknown function (DUF604) (.1)
AT5G41460	264 / 3e-82	Protein of unknown function (DUF604) (.1)
AT3G11420	262 / 7e-82	Protein of unknown function (DUF604) (.1)
AT1G01570	254 / 5e-79	Protein of unknown function (DUF604) (.1)
AT4G00300	258 / 1e-77	fringe-related protein (.1.2)
AT4G11350	251 / 1e-77	Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2)
AT1G05280	245 / 6e-76	Protein of unknown function (DUF604) (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10009957 [exp]	461 / 2e-159	AT5G12460	439 / 3e-151	Protein of unknown function (DUF604) (.1)
Lus10027153 [exp]	295 / 8e-95	AT1G05280	479 / 4e-167	Protein of unknown function (DUF604) (.1)
Lus10039692 [exp]	271 / 5e-86	AT1G05280	476 / 3e-166	Protein of unknown function (DUF604) (.1)
Lus10039693 [exp]	270 / 1e-85	AT4G15240	495 / 1e-173	Protein of unknown function (DUF604) (.1)
Lus10032293 [exp]	272 / 3e-85	AT4G23490	740 / 0.0	Protein of unknown function (DUF604) (.1)
Lus10017514 [exp]	263 / 7e-82	AT5G41460	759 / 0.0	Protein of unknown function (DUF604) (.1)
Lus10018123 [exp]	261 / 2e-81	AT5G41460	589 / 0.0	Protein of unknown function (DUF604) (.1)
Lus10027152 [exp]	254 / 4e-79	AT4G15240	521 / 0.0	Protein of unknown function (DUF604) (.1)
Lus10002713 [exp]	246 / 1e-75	AT3G11420	460 / 5e-159	Protein of unknown function (DUF604) (.1)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.009G051600 [exp]	523 / 0	AT5G12460	459 / 4e-159	Protein of unknown function (DUF604) (.1)
Potri.001G256200 [exp]	451 / 1e-155	AT5G12460	444 / 2e-153	Protein of unknown function (DUF604) (.1)
Potri.006G089150 [exp]	300 / 2e-96	AT2G37730	626 / 0.0	Protein of unknown function (DUF604) (.1)
Potri.016G101200 [exp]	295 / 1e-94	AT2G37730	618 / 0.0	Protein of unknown function (DUF604) (.1)
Potri.017G039600 [exp]	276 / 1e-87	AT1G05280	479 / 3e-167	Protein of unknown function (DUF604) (.1)
Potri.010G199900 [exp]	276 / 2e-87	AT3G11420	481 / 7e-167	Protein of unknown function (DUF604) (.1)
Potri.008G058900 [exp]	276 / 3e-87	AT3G11420	493 / 1e-171	Protein of unknown function (DUF604) (.1)
Potri.012G107800 [exp]	275 / 4e-87	AT4G23490	546 / 0.0	Protein of unknown function (DUF604) (.1)
Potri.009G026300 [exp]	270 / 5e-85	AT1G07850	637 / 0.0	Protein of unknown function (DUF604) (.1)
Potri.001G100700 [exp]	267 / 1e-83	AT4G23490	757 / 0.0	Protein of unknown function (DUF604) (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0110 [flax] [poplar]	GT-A	PF04646 [flax] [poplar]	DUF604	Protein of unknown function, DUF604

Representative CDS sequence

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>Lus10027356 pacid=23145388 polypeptide=Lus10027356 locus=Lus10027356.g ID=Lus10027356.BGIv1.0 annot-version=v1.0

ATGTCGACCTCCATCCTCCCCATCCAGAACCTCCATCTAAGGCTCCTCTGCAAATCCGTTCTAATCTCGGGCCTCGTTCTGCTATCTTACTACGTATTCT

GGTCAGATCACGCTATTAATTACGTGTACAGATCGACAATAAGTTCGTATGATCATCACATCTCCAGAAGTAGTATTGATGATTCCGGTGGCGTTTCTTC

TCGGACGAGTGTTACCCATCTGGGGTTTGTGATCATGAGCTCTGTTGATACTTGGGAGCAGAGGAGGCCGTACGTCGAGCTATGGTGGAGGCCGAATGTG

ACCAGAGGGTACGTGTTTTTAGATCGGGAGCCGGATAATGGTTTGTCGTCTTGGTCGGCGAGTTCGCCGCCGTTTGGAGTCGCCGGAGATGCTGCCGACC

TGAGGGGTTATCCGAATGCAGGTACAGTTAGAACCATGCGATCACTCCTCGACATGTATCGGATAAGGAAGAACGAAAATGATGATTTACGGTGGTTCAT

AATGTGCGACGACGATACGTTCTTTTTCGTGGATAACTTAGTCGATGTCTTGGGGAAATACGACCACACTAAGTACCATTACATCGGTGGTCAATCCGAG

TGTTTCCACTCCAATGCGGTCTTCTCCTTCGAAATGGGGTTCGGAGGAGCTGGGTATGCATTGAGCTACCCGCTCGTGAAAGCCCTGGCTCCCACGTTGG

ATGATTGCGTCACAAGGTATCCAAATATCCACGCCAGTGATCTCATGGCTTCGTCTTGCTTGGCGGATATCGGGGTCTCATTGACTATTGAGAAGGGCTT

TCATCAGATCGATCTCCACGGCGACATATCAGGCCTCCTCTCATCCCACCCGCAATCCCCAGCACTCACCCTCCACCACTTCCACGGAATCAACCCGATC

TTCCCGTCCAAACCGAACCGATACGAGTCACTCCGCCATCTCAGCACCTCGGCCAACCTCGACCAGTCTCGAATCCTCCAGCAGACCATCTGCCACAGTA

CTTCAAACTTCACCTTCTCGCTCTCATGGGGCTACTCCGTCCACCTCTACGAGACCATCCTTCCTCGGAGCTTCCTACGGAAGCCCCTCGAGACGTTCAA

GTCGTGGTTCTCAGAGCAGCCCGGGTATGTGTTCAACACTAGGTGGATGCTGAACAACCCTTGTGACACTCCTCATGTGTTCTTCTTTGACGAGGTTGTG

GAGGGTGAGGGCGGTGACACGACGACGTATGTGAGAGGGTTTGATCGTGGGTTGCCGGCTTGTTCGAATGCTGGGAGCCGGTCTGCTGACAGGGTTGGTT

TGATTCGGGTTCGGTCTAATTCTGCTGCGGGGCGTAAGATGCCTGGTGTGATTGAATGCTGCGATGTTGAGTACGATGGTAAGGCAGATGTTGCAGAGAT

CAAGCTAAGAGCTTGTGTGAAAGGTGAAGTCATCGCATAG

AA sequence

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>Lus10027356 pacid=23145388 polypeptide=Lus10027356 locus=Lus10027356.g ID=Lus10027356.BGIv1.0 annot-version=v1.0

MSTSILPIQNLHLRLLCKSVLISGLVLLSYYVFWSDHAINYVYRSTISSYDHHISRSSIDDSGGVSSRTSVTHLGFVIMSSVDTWEQRRPYVELWWRPNV

TRGYVFLDREPDNGLSSWSASSPPFGVAGDAADLRGYPNAGTVRTMRSLLDMYRIRKNENDDLRWFIMCDDDTFFFVDNLVDVLGKYDHTKYHYIGGQSE

CFHSNAVFSFEMGFGGAGYALSYPLVKALAPTLDDCVTRYPNIHASDLMASSCLADIGVSLTIEKGFHQIDLHGDISGLLSSHPQSPALTLHHFHGINPI

FPSKPNRYESLRHLSTSANLDQSRILQQTICHSTSNFTFSLSWGYSVHLYETILPRSFLRKPLETFKSWFSEQPGYVFNTRWMLNNPCDTPHVFFFDEVV

EGEGGDTTTYVRGFDRGLPACSNAGSRSADRVGLIRVRSNSAAGRKMPGVIECCDVEYDGKADVAEIKLRACVKGEVIA

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12460			Protein of unknown function (D...		Lus10027356 [exp]	0	1

Lus10027356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Lus10027356 [FLAX]

DESeq2's median of ratios [FLAX]

Coexpressed genes

Lus10027356 coexpression network