Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57490 415 / 6e-148 Ribosomal protein S5 family protein (.1) AT2G41840 412 / 7e-147 Ribosomal protein S5 family protein (.1) AT1G58380 410 / 9e-146 XW6 Ribosomal protein S5 family protein (.1) AT1G58684 410 / 1e-145 Ribosomal protein S5 family protein (.1) AT1G59359 410 / 1e-145 Ribosomal protein S5 family protein (.1) AT1G58983 410 / 1e-145 Ribosomal protein S5 family protein (.1) AT2G33800 72 / 2e-14 EMB3113 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1) AT1G64880 42 / 0.0004 Ribosomal protein S5 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014909 [exp] 480 / 1e-173 AT3G57490 414 / 9e-148 Ribosomal protein S5 family protein (.1) Lus10030130 [exp] 468 / 1e-168 AT2G41840 412 / 1e-146 Ribosomal protein S5 family protein (.1) Lus10009952 [exp] 462 / 7e-164 AT3G57490 410 / 7e-143 Ribosomal protein S5 family protein (.1) Lus10030129 [exp] 444 / 3e-160 AT3G57490 390 / 1e-138 Ribosomal protein S5 family protein (.1) Lus10025445 [exp] 62 / 9e-11 AT2G33800 357 / 3e-124 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1) Lus10015317 [exp] 62 / 1e-10 AT2G33800 358 / 2e-124 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G256800 [exp] 449 / 1e-161 AT1G58684 405 / 7e-144 Ribosomal protein S5 family protein (.1) Potri.006G052400 [exp] 437 / 7e-157 AT3G57490 417 / 7e-149 Ribosomal protein S5 family protein (.1) Potri.016G055000 [exp] 436 / 3e-156 AT2G41840 417 / 1e-148 Ribosomal protein S5 family protein (.1) Potri.011G053900 [exp] 68 / 4e-13 AT2G33800 246 / 1e-80 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1) Potri.004G045700 [exp] 65 / 5e-12 AT2G33800 316 / 6e-108 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF03719 [flax] [poplar] Ribosomal_S5_C Ribosomal protein S5, C-terminal domain CL0196 [flax] [poplar] DSRM PF00333 [flax] [poplar] Ribosomal_S5 Ribosomal protein S5, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10027358 pacid=23145486 polypeptide=Lus10027358 locus=Lus10027358.g ID=Lus10027358.BGIv1.0 annot-version=v1.0 ATGGCTGACAGAGCTGGAGGAGATCGTCCCCCACGCCGCGGTTTCGGAGACCGTGGTGGCCGAGGTGACAGAGGAGGCCGCAGAGGCGGCCGCCGTGGCG GACGTCGTGAGGAGGAAGAAAAGTGGGTCCCCGTCACCAAGCTCGGCCGTCTCGTGAAGGAAGGCAAAATCAAATCCCTGGAGCAAATCTACCTCCACTC CTTGCCAATAAAGGAGTACCAGATCATCGACACACTCGTCGGACCTTCGCTGAAGGACGAGGTGATGAAGATCTCTCCAGTCCAGAAGCAGACTCGCGCA GGGCAGAGGACGAGGTTCAAGGCCTTCGTGGTCGTTGGAGATGGGAACGGACACGTCGGATTGGGAGTCAAGTGCTCTAAGGAGGTTGCTACTGCGATCC GTGGTGCTATCATTTTGGCCAAGCTGTCTGTCATCCCTGTCAGGAGAGGATACTGGGGTAACAAGATTGGGCTGCCTCACACTGTCCCATGTAAGGTGAC CGGAAAGTGTGGCTCCGTCACCGTGAGGATGGTTCCGGCTCCACGGGGCGCTGGGATCGTTGCTGCTAGGGTGCCGAAGAAGGTTCTGCAGTTTGCTGGT ATTGAGGATGTTTTCACCTCATCCCGTGGATCCACCAAGACTCTTGGAAATTTTGTCAAGGCCACCTTCGACTGTCTGCTGAAGACGTACGGTTTCCTGA CCCCCGATTTCTGGAAGGACACCCGCTTCTCCAAGTCTCCCTTCCAAGAGTACACTGACATCTTGGGAAAGCCAACCAAGACCCTCCTCCTGGAGGATGT TGAGAGGCAACCGGAAGCCTGA
AA sequence Show only first row Show all	>Lus10027358 pacid=23145486 polypeptide=Lus10027358 locus=Lus10027358.g ID=Lus10027358.BGIv1.0 annot-version=v1.0 MADRAGGDRPPRRGFGDRGGRGDRGGRRGGRRGGRREEEEKWVPVTKLGRLVKEGKIKSLEQIYLHSLPIKEYQIIDTLVGPSLKDEVMKISPVQKQTRA GQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGLPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAG IEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPDFWKDTRFSKSPFQEYTDILGKPTKTLLLEDVERQPEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57490			Ribosomal protein S5 family pr...		Lus10027358 [exp]	0	1
AT3G09630			Ribosomal protein L4/L1 family...		Lus10026476 [exp]	1.0	0.9802
AT2G04390			Ribosomal S17 family protein (...		Lus10004208 [exp]	2.0	0.9783
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10035414 [exp]	2.0	0.9792
AT1G23290		RPL27A, RPL27AB	RIBOSOMAL PROTEIN L27A, Riboso...		Lus10004617 [exp]	2.2	0.9764
AT1G61870		PPR336	pentatricopeptide repeat 336 (...		Lus10020055 [exp]	2.6	0.9736
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10005286 [exp]	3.0	0.9792
AT4G35490		MRPL11	mitochondrial ribosomal protei...		Lus10031045 [exp]	3.2	0.9679
AT5G43960			Nuclear transport factor 2 (NT...		Lus10024953 [exp]	4.4	0.9622
AT3G49910			Translation protein SH3-like f...		Lus10018139 [exp]	4.9	0.9701
AT4G39880			Ribosomal protein L23/L15e fam...		Lus10041700 [exp]	5.7	0.9673

Compare expression of checked genes

Lus10027358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.