Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04590 958 / 0 SIR sulfite reductase (.1) AT2G15620 91 / 1e-18 ATHNIR, NIR1 ARABIDOPSIS THALIANA NITRITE REDUCTASE, nitrite reductase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009951 [exp] 1035 / 0 AT5G04590 1020 / 0.0 sulfite reductase (.1) Lus10030131 [exp] 1032 / 0 AT5G04590 1017 / 0.0 sulfite reductase (.1) Lus10014907 [exp] 321 / 8e-99 AT5G19450 896 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10014059 [exp] 82 / 6e-16 AT2G15620 960 / 0.0 ARABIDOPSIS THALIANA NITRITE REDUCTASE, nitrite reductase 1 (.1) Lus10019856 [exp] 48 / 2e-05 AT2G15620 583 / 0.0 ARABIDOPSIS THALIANA NITRITE REDUCTASE, nitrite reductase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G257000 [exp] 1052 / 0 AT5G04590 1054 / 0.0 sulfite reductase (.1) Potri.009G052600 [exp] 1047 / 0 AT5G04590 1007 / 0.0 sulfite reductase (.1) Potri.004G140800 [exp] 90 / 1e-18 AT2G15620 1021 / 0.0 ARABIDOPSIS THALIANA NITRITE REDUCTASE, nitrite reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03460 [flax] [poplar] NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain PF01077 [flax] [poplar] NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
Representative CDS sequence Show only first row Show all	>Lus10027360 pacid=23145447 polypeptide=Lus10027360 locus=Lus10027360.g ID=Lus10027360.BGIv1.0 annot-version=v1.0 ATGGCTCCGATAGTCGGAGCTGTAACCACAACGGCGGCGCTTCTAACGGAACCCAGAATTCAGCTACGGATGAGCTCCACTTCCTTCGCCGTCAACAGTC ATTTCAATGTCTTCTCGCTTCCTCCTCCCATCAGGAGCCATTTCTCTGTCAAAGCTGTTTCCACCCCAGTGAAGCCAGGGTCGGTGACAAAGAGGAGCAA GGTCGAGATTATCAAAGAACACAGCAACTACATAAGGTATCCACTCAACGAAGAGCTCTTAACCGATTCCCCAAGCATCAATGAGAGCGCCGTACAGCTC ATCAAGTTCCATGGAAGCTACCAGCAGTACAACAGAGATGAAAGAGGCCAAAGATCCTATTCCTTCATGCTCCGTACCAAGAACCCCTGCGGCAAAGTCC CTAACAAGCTCTACCTAACAATGGACGACTTAGCAGACAAATTCGGGATCGGTACTCTTCGACTCACCACCAGGCAGACTTTCCAGCTCCACGGTGTTCT CAAGCACGACCTCAAGACCTTAATGAGCAGCATCATTCAAAACATGGGGTCGACGCTCGGAGCTTGCGGTGATCTCAACAGAAATGTCCTTTCCCCGCCT GCTCCTATCCCGAGAAAGGACTATCTGTTTGCTCAGCAGACTGCTGAGCACATTGCTGCATTGCTCACTCCTCAGTCGGGGTTCTACTACGATATGTGGA TCGACGGGGAGAGAGTCCTGACAGCTGAAGAGCCTAATGAAGTTGTCAGGGCTCGAAATGACAACTCTCGTGGCACAAATTTTGTCGATTCTCCCGAACC TATCTATGGAACTCAATTCTTGCCTAGGAAGTTCAAGATTGCGGTTACTGTCCCTACTGATAACTCGGTCGACATTTTAACGAATGACATTGGTGTCGTT GTAGTTTCTGACGACAATGGGGAGCCTCAAGGGTTTGATATTTACGTTGGTGGTGGTATGGGAAGGACACACAGACTCGAGACCACATTCCCGCGGCTAG CTGAACCATTAGGCTATGTGCCGAAAGAGGACATTCTCTATGCGGTCAAGGCTATTGTGGTGACTCAACGAGAACACGGGAGGAGAGATGACCGAAAATA CAGTAGAATGAAGTACTTGATTGACTCGTGGGGGATTGAAAATTTCAGAACCGTGGTTGAGCAGTACTACGGGAAGAAATTCGAGCCGTTTCGTGAACTT CCCGAGTGGGAATTCAAAAGCCACCTGGGTTGGCATAAGCAGGGTTATAATGAATTGTACTTTGGTGTCAACATCGACAATGGTCGAATCGGAGGGGAAA TGAAGAAGGCATTGAGAGAGGTGATTGAGAAGTACAGCCTGGATGTTCGTATCACTGCGAACCAGAACCTAATCTTATGCGGAATAAAGAAAGCCTGGAG GCCTGCTATCACCACAACTCTAGCACAGGCCGGTTTACTGGAACATAGGTACCTTGACCCCCTCAACTTGACAGCCATGGCATGCCCGGCTTTCCCTCTT TGCCCATTGGCAATAACCGAAGCTGAACGTGGGATTCCGGATATCCTAAAACGGATTCGAGCTGTACTTGATAAGGTCGGTGTAAGAGAAGGACAGTCTG TCGTAGTTCGAGTAACCGGCTGCCCTAATGGCTGTGCTAGACCATACATGGCCGAACTCGGACTTGTTGGAGATGGTCCGAATAGCTACCAGATCTGGCT CGGGGGAAAACCGAATCAAACCGTGTTAGCTAGAGCATTCATGAACAAGGTTAAGGTCCAGGACCTCGAAAACGTGCTGGAACCTCTGTTCTATTACTGG AAACGTAAGAGACAAGCAAAGGAATCATTGGGAGAGTTGACAAACCATTGGAAACGTAAGAGACGAGTTAAGGAATCGTTCGGAGAATTCACAAACCGAG TGGGATTCGAGAAGCTCCAGCAGTGGATTGACGAATGGGAAGGTGAAGCTCCAACATTAAGGTTCACCCCCTTGAGCCTTGTTTCGGACAATGACACATA TGAGAAGATCGCTGCATTGGCGAAACTGCAGAACAAGACAGCGAATGAGTTGGCTGCAGAAATTGTCCGCAAGTACGCTGCTTCCAAGGAAATCAGTAAA CAAGAATGA
AA sequence Show only first row Show all	>Lus10027360 pacid=23145447 polypeptide=Lus10027360 locus=Lus10027360.g ID=Lus10027360.BGIv1.0 annot-version=v1.0 MAPIVGAVTTTAALLTEPRIQLRMSSTSFAVNSHFNVFSLPPPIRSHFSVKAVSTPVKPGSVTKRSKVEIIKEHSNYIRYPLNEELLTDSPSINESAVQL IKFHGSYQQYNRDERGQRSYSFMLRTKNPCGKVPNKLYLTMDDLADKFGIGTLRLTTRQTFQLHGVLKHDLKTLMSSIIQNMGSTLGACGDLNRNVLSPP APIPRKDYLFAQQTAEHIAALLTPQSGFYYDMWIDGERVLTAEEPNEVVRARNDNSRGTNFVDSPEPIYGTQFLPRKFKIAVTVPTDNSVDILTNDIGVV VVSDDNGEPQGFDIYVGGGMGRTHRLETTFPRLAEPLGYVPKEDILYAVKAIVVTQREHGRRDDRKYSRMKYLIDSWGIENFRTVVEQYYGKKFEPFREL PEWEFKSHLGWHKQGYNELYFGVNIDNGRIGGEMKKALREVIEKYSLDVRITANQNLILCGIKKAWRPAITTTLAQAGLLEHRYLDPLNLTAMACPAFPL CPLAITEAERGIPDILKRIRAVLDKVGVREGQSVVVRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGKPNQTVLARAFMNKVKVQDLENVLEPLFYYW KRKRQAKESLGELTNHWKRKRRVKESFGEFTNRVGFEKLQQWIDEWEGEAPTLRFTPLSLVSDNDTYEKIAALAKLQNKTANELAAEIVRKYAASKEISK QE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04590		SIR	sulfite reductase (.1)		Lus10027360 [exp]	0	1
AT1G79080			Pentatricopeptide repeat (PPR)...		Lus10031791 [exp]	1.0	0.9736
AT3G04760			Pentatricopeptide repeat (PPR-...		Lus10014660 [exp]	1.4	0.9678
AT3G12110		ACT11	actin-11 (.1)		Lus10001694 [exp]	3.0	0.9526
AT3G25660			Amidase family protein (.1)		Lus10007361 [exp]	3.0	0.9439
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10012055 [exp]	5.5	0.9362
AT1G02150			Tetratricopeptide repeat (TPR)...		Lus10024781 [exp]	6.3	0.9494
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Lus10021346 [exp]	6.9	0.9440
AT3G25920		RPL15	ribosomal protein L15 (.1)		Lus10010916 [exp]	7.1	0.9470
AT3G46610			Pentatricopeptide repeat (PPR-...		Lus10014577 [exp]	8.4	0.9385
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Lus10043079 [exp]	9.5	0.9462

Compare expression of checked genes

Lus10027360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.