Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19450 897 / 0 CPK8, CDPK19 calcium-dependent protein kinase 19 (.1.2) AT5G12480 891 / 0 CPK7 calmodulin-domain protein kinase 7 (.1.2) AT3G57530 834 / 0 ATCPK32, CDPK32, CPK32 calcium-dependent protein kinase 32 (.1) AT2G41860 811 / 0 CPK14 calcium-dependent protein kinase 14 (.1.2) AT1G74740 739 / 0 CDPK1A, CPK30, ATCPK30 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) AT3G51850 724 / 0 CPK13 calcium-dependent protein kinase 13 (.1) AT1G18890 714 / 0 CPK10, ATCDPK1, AtCPK10 calcium-dependent protein kinase 1 (.1) AT2G31500 662 / 0 CPK24 calcium-dependent protein kinase 24 (.1) AT5G12180 574 / 0 CPK17 calcium-dependent protein kinase 17 (.1) AT5G19360 564 / 0 CPK34 calcium-dependent protein kinase 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014907 [exp] 1051 / 0 AT5G19450 896 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10009947 [exp] 966 / 0 AT5G19450 889 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10030134 [exp] 842 / 0 AT5G19450 783 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10042370 [exp] 793 / 0 AT3G57530 820 / 0.0 calcium-dependent protein kinase 32 (.1) Lus10026742 [exp] 791 / 0 AT3G57530 793 / 0.0 calcium-dependent protein kinase 32 (.1) Lus10004807 [exp] 735 / 0 AT3G51850 986 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10002482 [exp] 731 / 0 AT3G51850 979 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10027808 [exp] 724 / 0 AT3G51850 962 / 0.0 calcium-dependent protein kinase 13 (.1) Lus10008631 [exp] 714 / 0 AT1G74740 886 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G257100 [exp] 929 / 0 AT5G12480 903 / 0.0 calmodulin-domain protein kinase 7 (.1.2) Potri.009G052700 [exp] 927 / 0 AT5G19450 903 / 0.0 calcium-dependent protein kinase 19 (.1.2) Potri.016G054600 [exp] 866 / 0 AT3G57530 864 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.006G052900 [exp] 850 / 0 AT3G57530 863 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.015G066200 [exp] 746 / 0 AT1G74740 918 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.012G071700 [exp] 745 / 0 AT1G74740 931 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.016G117200 [exp] 733 / 0 AT3G51850 982 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.006G101300 [exp] 722 / 0 AT3G51850 977 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.007G127000 [exp] 673 / 0 AT2G31500 744 / 0.0 calcium-dependent protein kinase 24 (.1) Potri.004G207300 [exp] 561 / 0 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10027361 pacid=23145474 polypeptide=Lus10027361 locus=Lus10027361.g ID=Lus10027361.BGIv1.0 annot-version=v1.0 ATGGGGAACTGCTGTGCAAGCCCTGGCAACAGCTCTCCTAAGAACACCAAGAACAACAAAGAGAAAGGCAAGAACAACAAAGGAAGCAATCCATTCTTCG GAACTGACTATGTAGTCAACGACAAGAAGCTCTACGTGTTGAGTGAACCTACTGGTAGGGACATCTCAGCTCACTACGATCTAGGCCGTGAGCTTGGCCG TGGTGAATTCGGAGTCACGTATTTGTCAACTGAGATGACCACTGGGGATAAGTATGCCTGCAAGTCCATCTCCAAGAAGAAGCTGAGGACTGCTATTGAT GTTGAGGATGTGAGGAGGGAAGTTGAGATCATGAAGCACTTGCCTCACCACCCAAATATCGTTTCGATTAAGGATACTTACGAGGATGACAGTGCTGTCC ACATTGTTATGGAGCTCTGTGAAGGTGGGGAGCTGTTCGATAGGATTGTTGCTAGAGGGCATTACACTGAACGGGCTGCTGCTGCTGTTATGCGGACCAT CGTTGAAGTTGTTCAGATGTGCCATAAGCATGGTGTGATGCACCGTGATCTCAAGCCGGAGAACTTTCTGTTTGCAAATAAGAAGGAAGCGTCCGCTTTG AAGGCAATCGATTTTGGATTGTCCGTCTTCTTTAAACCTGGAGAGAGATTCAATGAGATAGTGGGAAGTCCATATTACATGGCCCCCGAGGTCCTGAAAC GGAACTATGGCCCCGAAGTTGATGTATGGAGCGCTGGAGTTATCCTCTACATCTTGCTCTGTGGAGTTCCTCCATTTTGGGCAGAAACCGAGCAGGGTGT GGCACAGGCGATTATACGATCGGTCATAGACTTCAAGAGGGATCCATGGCCTAAAGTTTCGGATAATGCAAAGGATCTCGTAAGGAAGATGCTTAATCCC GATCCTAAGCAGCGCCTTACAGCTCAGCAAGTGCTTGACCATACGTGGCTGCAGAATGCGAAGAAGGCTCCGAATGTCCCATTGGGCGAGACTGTGAGAA CCCGGCTCAAACAGTTCTCTATGATGAACAAACTCAAGAAAAGAGCACTTAGGGTGATAGCCGAGCACTTATCGTTGGAGGAAGTTGCTGGCATAAAGGA GACCTTTGACATGATGGACACAAGCCAAAGGGGTAAAATCAACATTGATGAGCTCAGAGTTGGACTTCACAAGCTTGGCCAGCAGATTACCGATCCGGAT CTGCAAATTCTTATGGATGCTGCTGATATCGATGGAGATGGAACTCTGAACTATGGAGAGTTTGTCGCGATCACCATCCACATAAAAAAGATGGGGAACG ACGAGCATCTACACAAAGCGTTCGGGTTCTTCGACCAGAACAAGACGGGATACATTGAGATGGAGGAGCTTCGACAAGCACTGAATGACGACATTGACAC TTGTAGCGAAGACGTGTTGAATGCCATCATGCACGATGTGGACACCGACAAGGACGGCCGAATAAGCTACGAGGAGTTTGCGACGATGATGAAGGCAGGG ACTGACTGGAGAAAAGCTTCGAGGCAATATTCGAGAGAGAGATTCAACAGTCTAAGCTTGAAGTTGATGAGAGATGGTTCATTGCAGGTAGCTAGCTGA
AA sequence Show only first row Show all	>Lus10027361 pacid=23145474 polypeptide=Lus10027361 locus=Lus10027361.g ID=Lus10027361.BGIv1.0 annot-version=v1.0 MGNCCASPGNSSPKNTKNNKEKGKNNKGSNPFFGTDYVVNDKKLYVLSEPTGRDISAHYDLGRELGRGEFGVTYLSTEMTTGDKYACKSISKKKLRTAID VEDVRREVEIMKHLPHHPNIVSIKDTYEDDSAVHIVMELCEGGELFDRIVARGHYTERAAAAVMRTIVEVVQMCHKHGVMHRDLKPENFLFANKKEASAL KAIDFGLSVFFKPGERFNEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVIDFKRDPWPKVSDNAKDLVRKMLNP DPKQRLTAQQVLDHTWLQNAKKAPNVPLGETVRTRLKQFSMMNKLKKRALRVIAEHLSLEEVAGIKETFDMMDTSQRGKINIDELRVGLHKLGQQITDPD LQILMDAADIDGDGTLNYGEFVAITIHIKKMGNDEHLHKAFGFFDQNKTGYIEMEELRQALNDDIDTCSEDVLNAIMHDVDTDKDGRISYEEFATMMKAG TDWRKASRQYSRERFNSLSLKLMRDGSLQVAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19450		CPK8, CDPK19	calcium-dependent protein kina...		Lus10027361 [exp]	0	1
AT5G47200		AtRABD2b, AtRab...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10010999 [exp]	10.1	0.7983
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10017650 [exp]	14.5	0.7891
AT1G25400			unknown protein		Lus10034335 [exp]	16.9	0.7791
AT2G30880			Pleckstrin homology (PH) domai...		Lus10029819 [exp]	20.2	0.7969
AT3G53810			Concanavalin A-like lectin pro...		Lus10004982 [exp]	25.7	0.7182
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10038981 [exp]	27.8	0.7899
AT5G10290			leucine-rich repeat transmembr...		Lus10000629 [exp]	28.0	0.7904
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10029123 [exp]	28.5	0.7886
AT2G19760		PRF1, PFN1	profilin 1 (.1)		Lus10011138 [exp]	36.4	0.7720
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10001927 [exp]	42.0	0.7385

Compare expression of checked genes

Lus10027361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.