Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19855 175 / 1e-55 AtRbcX2 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002563 [exp] 328 / 4e-116 AT5G19855 202 / 1e-66 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1) Lus10009941 [exp] 227 / 6e-76 AT5G19855 221 / 1e-73 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1) Lus10030141 [exp] 226 / 2e-75 AT5G19855 231 / 2e-77 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G258100 [exp] 218 / 2e-72 AT5G19855 259 / 2e-88 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1) Potri.009G053300 [exp] 213 / 1e-70 AT5G19855 230 / 4e-77 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02341 [flax] [poplar] RcbX RbcX protein
Representative CDS sequence Show only first row Show all	>Lus10027363 pacid=23145435 polypeptide=Lus10027363 locus=Lus10027363.g ID=Lus10027363.BGIv1.0 annot-version=v1.0 ATGGCAGGCGGTGGAGCAGCAGCAGCTGCTGCTTTGCCTAGTACTTGTCTGTGCTTGACAAGGTCGAAGAGGACGACCACTACAGCAATGGTGGAGGTGG CTGTGAATCCCGTGATCCGCAGAAGTAGTGGTCACTTTAGGAAGCAGTATCATCAGCAGAGGAGGGATCGCCGGAGACTCGTCGCCGTTGCCAACCTCGG CGGGCAGTATGAGGATAGCTTCGGCGATGTTAAGTTGCAAATATTGAACTTGTTCACGTTCAAGGCTGTGAGGACGGTTATGAACCAGCTTTATGAGATG AACCCAACTCAATATCGCTGGTTTTACGATTTTGTTGCCAACAATAAGCCTGGAAATGGGAAGCTTTTTCTCAGAACCTTAGCCAAAGAGAGGCAAGACC TAGCTGAAAGAGTCATGGTGACTAGACTTCATCTTTATGGAAGATGGATCAAGAAATGCAACCATGAGGAGATGTACAAGGCGATCTCAGACGAGAACTT GGAGTTGATGCGAGAACGGCTCCTGGAGACCGTGATTTGGCCATCAGATGATACCAACACCGAGAAGATCGGTTGA
AA sequence Show only first row Show all	>Lus10027363 pacid=23145435 polypeptide=Lus10027363 locus=Lus10027363.g ID=Lus10027363.BGIv1.0 annot-version=v1.0 MAGGGAAAAAALPSTCLCLTRSKRTTTTAMVEVAVNPVIRRSSGHFRKQYHQQRRDRRRLVAVANLGGQYEDSFGDVKLQILNLFTFKAVRTVMNQLYEM NPTQYRWFYDFVANNKPGNGKLFLRTLAKERQDLAERVMVTRLHLYGRWIKKCNHEEMYKAISDENLELMRERLLETVIWPSDDTNTEKIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10027363 [exp]	0	1
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10002563 [exp]	1.4	0.9601
AT3G60810			unknown protein		Lus10004025 [exp]	2.6	0.9090
AT2G42975			unknown protein		Lus10007332 [exp]	2.8	0.9125
AT4G01060	MYB	CPL3, ETC3	ENHANCER OF TRY AND CPC 3, CAP...		Lus10005949 [exp]	6.7	0.9055
AT1G53440			Leucine-rich repeat transmembr...		Lus10042505 [exp]	7.3	0.8768
AT1G07010		AtSLP1	Shewenella-like protein phosph...		Lus10031284 [exp]	7.9	0.9146
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10042771 [exp]	8.7	0.9127
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Lus10003323 [exp]	8.7	0.9119
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10032217 [exp]	8.8	0.8901
AT1G11090			alpha/beta-Hydrolases superfam...		Lus10011212 [exp]	10.9	0.8812

Compare expression of checked genes

Lus10027363 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.