Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51350 683 / 0 ARM repeat superfamily protein (.1) AT1G09270 49 / 9e-06 IMPA-4 importin alpha isoform 4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002562 [exp] 1228 / 0 AT1G51350 646 / 0.0 ARM repeat superfamily protein (.1) Lus10016850 [exp] 52 / 1e-06 AT4G16143 858 / 0.0 importin alpha isoform 2 (.1.2) Lus10037722 [exp] 51 / 3e-06 AT3G06720 884 / 0.0 importin alpha isoform 1 (.1.2) Lus10010028 [exp] 48 / 3e-05 AT3G06720 862 / 0.0 importin alpha isoform 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G053400 [exp] 770 / 0 AT1G51350 787 / 0.0 ARM repeat superfamily protein (.1) Potri.013G007300 [exp] 49 / 1e-05 AT1G09270 877 / 0.0 importin alpha isoform 4 (.1.2.3) Potri.002G199600 [exp] 47 / 3e-05 AT3G06720 858 / 0.0 importin alpha isoform 1 (.1.2) Potri.005G020400 [exp] 46 / 9e-05 AT3G06720 880 / 0.0 importin alpha isoform 1 (.1.2) Potri.002G052700 [exp] 46 / 9e-05 AT5G19330 994 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.010G001400 [exp] 46 / 0.0001 AT4G16143 849 / 0.0 importin alpha isoform 2 (.1.2) Potri.005G210000 [exp] 45 / 0.0002 AT5G19330 977 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.013G010900 [exp] 45 / 0.0002 AT3G06720 869 / 0.0 importin alpha isoform 1 (.1.2) Potri.008G214100 [exp] 45 / 0.0002 AT4G16143 881 / 0.0 importin alpha isoform 2 (.1.2) Potri.014G124200 [exp] 43 / 0.0006 AT3G06720 868 / 0.0 importin alpha isoform 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027364 pacid=23145552 polypeptide=Lus10027364 locus=Lus10027364.g ID=Lus10027364.BGIv1.0 annot-version=v1.0 ATGCCTTCTCCCGCCGCCTCCTCCTCCGTCGCCGTCGGAGATGGCGGCCTTCCTGCGATCGTCTCCCGCCTTTCCTCCGGCGACCCTGACATCAAGCTCA AAGCCCTCCGGGAAGTCAAAAACCAGATAATTGGCAACAAGACGAAGAAGCTCAACTTCGTGAAGCTAGGAGCCGTCCCGCTCGTTGCCTCAATTCTCTC CGCCGCTATTTCCGACGATGAGGGGTTCCAATCGGCTCCCCGCGCTTCTGTCCCTGGAATGCTTGGGTATTCAAGCAATGTCGTCGTCCAATCGGCTGCA GCTCTAGGCAGCTTTGCCTGTGGCTTCGACGACGGCGCCCAGGCCGTTCTCTCCGCAGGCGCTGTGCCGCTCTTGATTAGACTGCTTTCTCATCCCGACG GCAAAGTGGTGGATGCTGGTGCTCGTTCCTTGAGAATGATCTACCAGTCTGAATTAGCTCCGAAATACGAACTCCTTGAACATAGAAACTTAGAATTCCT GGTTTCCTTATTGAATAGCGAGGGTGTAAACGTTACTGAGCTAGGTGCAAGCATTATAGCCCATTCCTGCAGGACAAACGCAGAGCAGAAAGCTTTGCTT GAAGCTGGGACCTTGAAGAGGCTGATCAGCCTTCTTGATGGGACATTAGGTCAGAAGGACGCTAGCTTAGGTTCTCTTGCCGCTGTTTTCAGAGACAATG CTGAAGTCATTACAAAGTTTCTGGGTCCTCATGGTGGGAAGCCATTGAATTCCATTACTTATTTGATACAGGATGTGAATCCTAAGACAAGACTGCTTGC ATGTCAGTGTTTGATTATCATTAGAAATGCTACGGACGGTTATCTCCAGGAAGTAAGGTTCAAGATCAAGTTGGTCAATACCCTCCTTGAGCTCCTTGAT GATCCAGGTCAAGTTGGAGATGAATCTCCATATGTATTTTCTAGTTTGATTGGTGGAAAGGAGGACTTGCAGAAGATAGCTCTTGAAGCAGATGCTATCC TTAAATTACGTGATTGCATGAAAACGGATGAAGGAAATCCTAGGCGTCTTCGAGGTGTATTATTGGCGTTGGCTGATCTTTGCTCAAAGTTAGAGAGCTG TAGATTGGCTGTCCTATCTTTTGAGGTTTTGAATCCACTTATTGGTTTCCTGGGGCATAAGGATGAACAGATGCGAATTTCAGCTTGTGCCTGTTTAAGA AATGTCACTCGTTCTATCAAGAAATTGTGTGCAGGTTACTTTATGAAAAACGAAGCCCTTGTTACTGCTTTGATTCAGCTGTTAATGGATTCTTCAGAGG AAGTCCAGGTTGCAGCTCTTGCTGTTGTTAGTAACATTGTCGTTGATTTCGCATCGCATAAGTCTGCATTTATTGCACATGGAGGCTTGCAACAGATTCT CAGTTTATCAAAATCGATGATTCCGGCTGTCCGGTCGAACTCCCTATGGGCTTTGAGGAACATGACGTTCCTTGCAGACAATAAATGCAAAGAAGCCGTT TCTTTAGGGATGACTACGTCACTGATATCGAGTCTTATATGTGACAGTGAGCCACTTGTTAAGGAGCAAGCTCTGGCTTTTGTTCGCAATCTTGTTGATG GAAGTACTGAATCAATTGAGCATGTGCTTTCTGACGATGGTATTGTTTTGGATGCTGTTGGGCGACAATTAAGGGGTTGTTTGAAAACTGAAGCTTGGAT ACAAGGAATGTATGTGCTCGGAAACATTGCCTGTGGAAACGAGTCTCACAAGGAAGCAGTTATGAACCAACTTTTCCCGCAACTGGAAAATGAAACCGGA TCGTTCATTGTCAAATTCTTGCTGGATGCCGACAGCAGACTGCGCATTGCCGCTGTCTGGACCCTCATAAATCTCACCTTCCCATCTAGTACTGAAGCAG TTAATCGGCTGACGAAACTACAGAATTCCAGGGTAATGGCCCTAGTAAGGAATATGGTCAATGATCCCTGCTTGGACGTGAAGCTTAGAGTTAGAACATT GCTCACCCAGGCTATGTGTTTCGGCGACGTTTGA
AA sequence Show only first row Show all	>Lus10027364 pacid=23145552 polypeptide=Lus10027364 locus=Lus10027364.g ID=Lus10027364.BGIv1.0 annot-version=v1.0 MPSPAASSSVAVGDGGLPAIVSRLSSGDPDIKLKALREVKNQIIGNKTKKLNFVKLGAVPLVASILSAAISDDEGFQSAPRASVPGMLGYSSNVVVQSAA ALGSFACGFDDGAQAVLSAGAVPLLIRLLSHPDGKVVDAGARSLRMIYQSELAPKYELLEHRNLEFLVSLLNSEGVNVTELGASIIAHSCRTNAEQKALL EAGTLKRLISLLDGTLGQKDASLGSLAAVFRDNAEVITKFLGPHGGKPLNSITYLIQDVNPKTRLLACQCLIIIRNATDGYLQEVRFKIKLVNTLLELLD DPGQVGDESPYVFSSLIGGKEDLQKIALEADAILKLRDCMKTDEGNPRRLRGVLLALADLCSKLESCRLAVLSFEVLNPLIGFLGHKDEQMRISACACLR NVTRSIKKLCAGYFMKNEALVTALIQLLMDSSEEVQVAALAVVSNIVVDFASHKSAFIAHGGLQQILSLSKSMIPAVRSNSLWALRNMTFLADNKCKEAV SLGMTTSLISSLICDSEPLVKEQALAFVRNLVDGSTESIEHVLSDDGIVLDAVGRQLRGCLKTEAWIQGMYVLGNIACGNESHKEAVMNQLFPQLENETG SFIVKFLLDADSRLRIAAVWTLINLTFPSSTEAVNRLTKLQNSRVMALVRNMVNDPCLDVKLRVRTLLTQAMCFGDV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51350			ARM repeat superfamily protein...		Lus10027364 [exp]	0	1
					Lus10014954 [exp]	7.7	0.8905
AT5G35753			Domain of unknown function (DU...		Lus10006380 [exp]	8.2	0.8838
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Lus10008681 [exp]	9.4	0.8696
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10037701 [exp]	11.9	0.8702
AT2G05170		ATVPS11	vacuolar protein sorting 11 (....		Lus10012332 [exp]	12.0	0.8620
AT5G65950			unknown protein		Lus10041289 [exp]	15.9	0.8644
AT1G18950			DDT domain superfamily (.1)		Lus10042167 [exp]	16.7	0.8622
AT3G07140			GPI transamidase component Gpi...		Lus10025918 [exp]	19.4	0.8657
AT4G38870			F-box and associated interacti...		Lus10003705 [exp]	22.4	0.8501
AT5G48520		AtAUG3	augmin 3, unknown protein		Lus10025869 [exp]	25.3	0.8137

Compare expression of checked genes

Lus10027364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.