Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08820 129 / 1e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 128 / 3e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09410 122 / 3e-33 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G24000 121 / 6e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G44230 120 / 1e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49142 120 / 2e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 120 / 2e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40410 119 / 5e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03880 119 / 5e-32 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 119 / 6e-32 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002561 [exp] 145 / 1e-46 AT3G24000 91 / 3e-23 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013149 [exp] 128 / 2e-35 AT1G56690 946 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008967 [exp] 125 / 5e-34 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028855 [exp] 123 / 1e-33 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022890 [exp] 123 / 1e-33 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039117 [exp] 122 / 3e-33 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 122 / 4e-33 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000117 [exp] 118 / 1e-32 AT4G21065 404 / 5e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10040577 [exp] 117 / 2e-32 AT1G25360 577 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G258500 [exp] 179 / 2e-53 AT2G40720 481 / 4e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 131 / 2e-36 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G027800 [exp] 131 / 2e-36 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G091600 [exp] 129 / 2e-35 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G119000 [exp] 127 / 5e-35 AT5G44230 792 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 127 / 6e-35 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 124 / 6e-34 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G021300 [exp] 123 / 2e-33 AT1G20230 852 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G051300 [exp] 122 / 2e-33 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G014800 [exp] 122 / 2e-33 AT5G40410 749 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027365 pacid=23145437 polypeptide=Lus10027365 locus=Lus10027365.g ID=Lus10027365.BGIv1.0 annot-version=v1.0 ATGCCTGTAGAGCCTGATGCATCCATTTGGAGAGCTCTTCTGAATGGCTGCAGAGTGCATTCAGACCCGGAAATGGCTGCATCGGTGTTTCGGAACCTGG TTTGGTTGGAACCGATGAATCCTGGGAACTATGTGTTGCTGGGGAACATCTATGCAGCAGCAGGGCTTTGGTCTGATGTTAGGCATGTGAGGACATTGTT GAAGGAGAAGGGTTTGAAGAAGGCTCCGGGAATCAGTTGGATTGTGGTTGAAGGTGAAGTTCATTGTTTTGCTGCTGGTGATACATCGCATCCGGATTCT GTTGAGGTTTATGCAAGTTTGGAATCTTTGTTGGATCTGATGAGAGAAGTTGGATATGATAGTGAATGTAATAGTTTCATATTACATGATGAAGAGGATT AG
AA sequence Show only first row Show all	>Lus10027365 pacid=23145437 polypeptide=Lus10027365 locus=Lus10027365.g ID=Lus10027365.BGIv1.0 annot-version=v1.0 MPVEPDASIWRALLNGCRVHSDPEMAASVFRNLVWLEPMNPGNYVLLGNIYAAAGLWSDVRHVRTLLKEKGLKKAPGISWIVVEGEVHCFAAGDTSHPDS VEVYASLESLLDLMREVGYDSECNSFILHDEED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10027365 [exp]	0	1
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10003857 [exp]	2.2	0.8371
AT5G04780			Pentatricopeptide repeat (PPR)...		Lus10021649 [exp]	2.4	0.8521
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10021069 [exp]	2.6	0.8548
					Lus10029579 [exp]	3.0	0.8505
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10027455 [exp]	3.5	0.8271
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10039814 [exp]	4.0	0.8115
AT5G04780			Pentatricopeptide repeat (PPR)...		Lus10034715 [exp]	5.3	0.8395
AT3G49710			Pentatricopeptide repeat (PPR)...		Lus10006743 [exp]	5.7	0.7967
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Lus10001558 [exp]	6.2	0.8029
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Lus10030309 [exp]	6.3	0.8090

Compare expression of checked genes

Lus10027365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.