Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40720 302 / 3e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G39620 278 / 2e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 275 / 4e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 277 / 1e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 266 / 9e-78 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G33680 261 / 9e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G03580 261 / 1e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18485 261 / 4e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09040 261 / 7e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G17210 252 / 1e-73 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004081 [exp] 301 / 4e-90 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000020 [exp] 270 / 2e-86 AT3G56550 100 / 2e-24 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014707 [exp] 290 / 7e-86 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012873 [exp] 288 / 7e-86 AT2G40720 946 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017082 [exp] 289 / 1e-85 AT1G16480 507 / 3e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10036071 [exp] 279 / 8e-83 AT1G18485 464 / 5e-151 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008967 [exp] 269 / 7e-79 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024220 [exp] 269 / 1e-78 AT1G74600 924 / 0.0 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10018978 [exp] 271 / 3e-78 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G258500 [exp] 800 / 0 AT2G40720 481 / 4e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G052200 [exp] 315 / 2e-95 AT2G39620 816 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 300 / 5e-89 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G047600 [exp] 298 / 8e-89 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 283 / 2e-83 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 282 / 2e-82 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G090600 [exp] 279 / 2e-82 AT2G40720 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G093000 [exp] 276 / 3e-82 AT1G69350 832 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G205900 [exp] 271 / 2e-80 AT2G17210 737 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G137900 [exp] 273 / 1e-79 AT3G09040 421 / 3e-131 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10027366 pacid=23145491 polypeptide=Lus10027366 locus=Lus10027366.g ID=Lus10027366.BGIv1.0 annot-version=v1.0 ATGGCTATTTCCCTGTGTGTAATCCCTCAGGCTTTCTCTCATCCGACCAAGAATGGCGAAATCCGCAGACAAGAAGCCGGTGGTAAGGACTGGAATAGGA TAATCAGCAATCAAGCTAGGCTGAAAAGGGACGAAGCGATTCTTTCCACATTCACCCAGATGGAAGCTCACGGGGTCTGTCCTGATAGATACACTCTGCC TCTGGTTTTCAAAGCCTTTACTGGGCTGAACGCCGTCGAGAAAGGGAGGAAGCTACACGGAAGAATCCAGGGAAGCACTAACTTGATTGGAGATGTTCGA GTCTCTACTGCAATTATTGATTTTTACTGCAAGTGTGGGTTTGTCGAGGAAGCATTTCAAGTGTTCGACGAAATGCGTGAGAGGGACTTAGTGTCATGGA ATGCGATGATAGCTGGATATGTTGGTTTTGGGTACTTTGAGGATGCTATTGGGTTGTTTAAAATGATGGGGAATGACGGGTTTCGTCCCAATTCTCGTAC TTTGGTGCAGCTTCTCTTGGCTTGCGGGGGGGTTTTGGAGCTGAGGTTAGGGAAAGAGATACATGGATATAGCTTGAGGAATGGATATTTCGATGTGGAT CCTCACGTGGGGACTGCTTTGGTTGGATTCTATATGAATTTCGATGTCCGGGTTTCTGGTCTTGTGTTTGATTTGATGTCTGTGAGGAGTTCCGTGAGCT GGAATGCGATGATGACTGGATACTATGATGCTGGGTATCCATTGCTGGCTTTGGATATCTTTGTTCAGATGCTTGAGCTTGGTGTTAAGCTCGATTCAGT TACGATATTGGTTTTTGTTCAAGCCTGCTCGGAGCTCGGATGTCTGAAATTGGGGATGCAAATCCATCAATTAGCTACTAAGCTCAGTTCTGGAAATGAT CTGTTCATAGCAAACTCTTTGATCAACATGTACAGTGAGCTCAGAAGTCTGAATTCAGCTTATAAGATATTCAATACTACGAGAATCCGGGATTCTGCAT TATGGAACTCCATGATAGCTGTGTTTATAGAACACGGTTATCATAAAGAAGCTACTGATCTGTTCATCAGAAAAACAACAGAAGAAGTAACAACAGATTC AACGACATTCGTTGTTATGCTTTCCTTCTGTCGAGAGGCTCTAGATGGGTTGGAATTAGGTAGAATGATACATGCTCATGCATTGAAGCTAGGAATTGAA ACCGATGTCTCTGTAAGGAACGCCTTGTTAAGCATGTACACAGATCGAAACTGCATTGAAGCTGCAAAGAATGTCTTCTCTGCGATGAAAGAAGCTGATG TCGTATCGTATAACACCATGATTTTGGCTACAGAGAATGAAGAAGCTTGGGAGCTCTTCGGAGAAATGCAACGATCCGAAATCGTTCCAAATGCTTACAC AATGGTGTCTCTCCTTGCTTCCTGCAGAGACGAAACGGATCTCAAAGTTGGCCGTTCGATCCATGGTTTTGTGGTTAAACTTAAACACGGGTTTGATGCC AACTCAGCATTGAACACTGCTCTTACTGATATGTACATGACTTGTGGCGATGAAGCAACAGCTAGGGATCTCTTCGAGTCCTGTTCGAGTCGAGACACTA TCTCGTGGAATGCTATGATTTCCGCCTATGTGAAGAGGAACCAAACTGATGAAGCTGTATCACTGTTCAGTCGTATGATGATGTCTGAATCGGACCCTAA TCCTGTAACGGTGATCAATGTTCTGTCAATATGTACCGATCTGCCACGTGGACGGCAACTGCACGGTTTTGCAACTCGTCGATTCGGTCTCGAACCATCT CTAGCTAATGCCCTAATCGCAATGTATGCAAGGTGTGGCAGTTTGAAAAAAGCTGAAACCATCTTCAGTAATCTTCAGGAACATTCAAAGAATCTAGTTT CCTGGAACGCCATGATCAACGCTTACTCGACGAATGGATCGTTCAACGAAGCCATCTCGACATTCATGCAAATGCTCAAAGACGGGTGGAACCCTAACGG TGTAACGTTCCTATCCTTACTGTCATCCTGCAGACACTCCGGCTCTAGATCTTCCACTCCGTGGTTCATGACTTCAACTTAA
AA sequence Show only first row Show all	>Lus10027366 pacid=23145491 polypeptide=Lus10027366 locus=Lus10027366.g ID=Lus10027366.BGIv1.0 annot-version=v1.0 MAISLCVIPQAFSHPTKNGEIRRQEAGGKDWNRIISNQARLKRDEAILSTFTQMEAHGVCPDRYTLPLVFKAFTGLNAVEKGRKLHGRIQGSTNLIGDVR VSTAIIDFYCKCGFVEEAFQVFDEMRERDLVSWNAMIAGYVGFGYFEDAIGLFKMMGNDGFRPNSRTLVQLLLACGGVLELRLGKEIHGYSLRNGYFDVD PHVGTALVGFYMNFDVRVSGLVFDLMSVRSSVSWNAMMTGYYDAGYPLLALDIFVQMLELGVKLDSVTILVFVQACSELGCLKLGMQIHQLATKLSSGND LFIANSLINMYSELRSLNSAYKIFNTTRIRDSALWNSMIAVFIEHGYHKEATDLFIRKTTEEVTTDSTTFVVMLSFCREALDGLELGRMIHAHALKLGIE TDVSVRNALLSMYTDRNCIEAAKNVFSAMKEADVVSYNTMILATENEEAWELFGEMQRSEIVPNAYTMVSLLASCRDETDLKVGRSIHGFVVKLKHGFDA NSALNTALTDMYMTCGDEATARDLFESCSSRDTISWNAMISAYVKRNQTDEAVSLFSRMMMSESDPNPVTVINVLSICTDLPRGRQLHGFATRRFGLEPS LANALIAMYARCGSLKKAETIFSNLQEHSKNLVSWNAMINAYSTNGSFNEAISTFMQMLKDGWNPNGVTFLSLLSSCRHSGSRSSTPWFMTST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10027366 [exp]	0	1
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10037260 [exp]	2.0	0.8901
AT1G05670			Pentatricopeptide repeat (PPR-...		Lus10013283 [exp]	2.4	0.8823
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10016390 [exp]	3.0	0.8717
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10030549 [exp]	3.6	0.8642
AT3G54090		FLN1	fructokinase-like 1 (.1)		Lus10021118 [exp]	5.1	0.8966
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Lus10008618 [exp]	6.0	0.8300
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10030932 [exp]	6.3	0.8829
AT5G39840			ATP-dependent RNA helicase, mi...		Lus10034868 [exp]	7.7	0.8174
AT4G02990		RUG2, BSM	RUGOSA 2, BELAYA SMERT, Mitoch...		Lus10014877 [exp]	8.3	0.8900
AT1G07740			Tetratricopeptide repeat (TPR)...		Lus10005877 [exp]	9.2	0.8571

Compare expression of checked genes

Lus10027366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.