Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51340 574 / 0 MATE efflux family protein (.1.2) AT3G08040 472 / 9e-161 ATFRD3, MAN1, FRD3 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) AT2G38330 306 / 3e-96 MATE efflux family protein (.1) AT4G38380 288 / 3e-89 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039609 [exp] 492 / 3e-168 AT3G08040 619 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10029517 [exp] 484 / 6e-164 AT3G08040 596 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10042365 [exp] 478 / 3e-163 AT1G51340 571 / 0.0 MATE efflux family protein (.1.2) Lus10026303 [exp] 471 / 3e-160 AT1G51340 564 / 0.0 MATE efflux family protein (.1.2) Lus10016412 [exp] 468 / 6e-159 AT1G51340 569 / 0.0 MATE efflux family protein (.1.2) Lus10012227 [exp] 317 / 8e-100 AT2G38330 608 / 0.0 MATE efflux family protein (.1) Lus10023943 [exp] 276 / 5e-84 AT4G38380 593 / 0.0 MATE efflux family protein (.1) Lus10026829 [exp] 263 / 2e-79 AT4G38380 535 / 0.0 MATE efflux family protein (.1) Lus10002856 [exp] 236 / 4e-70 AT2G38330 477 / 2e-165 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G053700 [exp] 641 / 0 AT1G51340 634 / 0.0 MATE efflux family protein (.1.2) Potri.016G053600 [exp] 540 / 0 AT1G51340 543 / 0.0 MATE efflux family protein (.1.2) Potri.001G266900 [exp] 535 / 0 AT3G08040 598 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.009G061100 [exp] 531 / 0 AT3G08040 566 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.016G126000 [exp] 324 / 8e-103 AT2G38330 499 / 9e-173 MATE efflux family protein (.1) Potri.009G143400 [exp] 294 / 5e-91 AT4G38380 626 / 0.0 MATE efflux family protein (.1) Potri.004G183600 [exp] 294 / 6e-91 AT4G38380 604 / 0.0 MATE efflux family protein (.1) Potri.005G102800 [exp] 275 / 7e-84 AT4G38380 547 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10027367 pacid=23145357 polypeptide=Lus10027367 locus=Lus10027367.g ID=Lus10027367.BGIv1.0 annot-version=v1.0 ATGATGTCCATGGAAGATTCTCCATTTCCATCCATGGCTAAGCCAAGAATCCCTCTCTGTGTTTTTGTTAAAGATTGGAGGCTTGTGCTGAAACTGGATG AGCTTGGTGTTGAGATAGCTCAAATAGCTCTTCCAGCTGCTCTTGCTCTAACAGCTGACCCTATTGCTTCCCTGGTCGACACAGCATTCATCGGCCGAAT AGGTTCTGTAGAACTTGCTGCTGTTGGTGTATCCATTGCTCTATTCAATCAGGTTTCAAGGATTGCCATATTCCCACTAGTTAGTGTCACTACCTCATTT GTAGCGGAGGAAGATGCTGCTGCTGCTTCTGCTATGGCTGATCATAAAGGTGTGACTCATGAACCTGAAGAGATGGAATCAGTTACAACAACCAATGAGA GTAAACAGTTGATTCCCACAAATGAATCAAGTGTTAGCAGCAGCTTTGAGGTAGATACCAACAAGAGCAAGAATGAAAGAAGGCATATCCCTTCTGCATC ATCAGCTCTCATCATCGGTGCTATTCTCGGCCTTGTCCAAGCTGTGTTCCTCATTTCTGCTGCAAAGCCACTCCTCAGCTTCATGGGAATCAAAGCTGAC TCACCTATGTTAGCTCCTGCACAGCAATACTTGACACTGAGATCTTTAGGTGCCCCTGCAATTCTCCTTTCACTGGCAATGCAAGGAGTTTTCCGCGGTT TTAAAGACACGAAAACGCCCCTCTATGCTACCCTGGCTGGTGATCTCACAAACATCATACTTGATCCGATATTCATGTTTGTTTTCGATCTCGGAGTCAG CGGTGCAGCCATTTCCCACATCATATCCCAGTACTTGATCTCCGTCATACTATTATGGAGGCTGATTGCACAAGTTGACCTCGTACCACCTACCATCAAG CATCTCCAGTTCAGCAGGTTCCTCAAAAACGGCTTCCTGCTACTGATGAGAGTAATGGCTGTAACATTCTGTGTCACTCTTTCCGCATCCTTTGCTGCAA GGCAAGGCTCAACATCGATGGCAGCATTTCAAATCTGCTTGCAAGTCTGGCTAGCCACTTCTCTCCTTGGCTTCCTGCTCCTGATAGGCGTAATGGCTGT AACATTCTGTGTCACTCTTTCCGCATCCTTTGCTGCAAGGCAAGGCTCAACATCGATGGCAGCATTTCAAATCTGCTTGCAAGTCTGGCTAGCCACTTCT CTCCTTGCTGATGGCTTGGCTGTAGCTGGCCAGGCTATAATTGCAGGGGCTTTCGCTCAGAAAGACTTCGAAAGAGCCACAGCAACTGCATCTAGAGTAC TTCAGCTTGGGTTGCTACTCGGTCTAGTGCTGGCATTGGTGCTTGGACTAGGACTCACATTTGGTGCAAGATTGTTCACTAATGATGCCAGTGTTCTTCA CCTCATAGCCATAGGCATCCCGTTTGTTGCAGGCACCCAACCGATCAATGCATTAGCTTTCGTCTTCGATGGCATCAACTTCGGAGCATCAGATTTCGGA TATGCTGCCTACTCAATGGTTATGGTGGCAATATTCAGCATTTGGTGTCTGTTGTATTTATCTTCAAGCTACCACTTCATTGGACTGTGGATTGCTCTCA CCATTTATATGAGCCTTAGAGCTTTTGCTGGCTTTTGGAGGCTGGGAACTGGGTACAAATCTTGGCGAGCTGCTGGTTTCCCTTGTTGCCGATCGACGGC GAATCTATTTCTCGCCGCCGCCCTTGTTCTCCTTCCGGCTGTCGCAAGTGAATCACACATGCGAAGATTGCCGTTGTTTCCTACCGGCAGGTTCCTTCTC TATCCCGCCATCGCACGCCAATACCATAACTTATCATACAGCTCAGAAGAAGATAGGATTGACGGCGGTTCCGATTGTTTCCGATCACCGGCGGCTCTGC TTCGTTGGCCCCCTCCTTCTCCACCTTTCCTGCCGTTCCTAGACAGCGCACGCGCCCGTAAGAATTCGAGCGTGCGCGAGTAA
AA sequence Show only first row Show all	>Lus10027367 pacid=23145357 polypeptide=Lus10027367 locus=Lus10027367.g ID=Lus10027367.BGIv1.0 annot-version=v1.0 MMSMEDSPFPSMAKPRIPLCVFVKDWRLVLKLDELGVEIAQIALPAALALTADPIASLVDTAFIGRIGSVELAAVGVSIALFNQVSRIAIFPLVSVTTSF VAEEDAAAASAMADHKGVTHEPEEMESVTTTNESKQLIPTNESSVSSSFEVDTNKSKNERRHIPSASSALIIGAILGLVQAVFLISAAKPLLSFMGIKAD SPMLAPAQQYLTLRSLGAPAILLSLAMQGVFRGFKDTKTPLYATLAGDLTNIILDPIFMFVFDLGVSGAAISHIISQYLISVILLWRLIAQVDLVPPTIK HLQFSRFLKNGFLLLMRVMAVTFCVTLSASFAARQGSTSMAAFQICLQVWLATSLLGFLLLIGVMAVTFCVTLSASFAARQGSTSMAAFQICLQVWLATS LLADGLAVAGQAIIAGAFAQKDFERATATASRVLQLGLLLGLVLALVLGLGLTFGARLFTNDASVLHLIAIGIPFVAGTQPINALAFVFDGINFGASDFG YAAYSMVMVAIFSIWCLLYLSSSYHFIGLWIALTIYMSLRAFAGFWRLGTGYKSWRAAGFPCCRSTANLFLAAALVLLPAVASESHMRRLPLFPTGRFLL YPAIARQYHNLSYSSEEDRIDGGSDCFRSPAALLRWPPPSPPFLPFLDSARARKNSSVRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51340			MATE efflux family protein (.1...		Lus10027367 [exp]	0	1
AT3G02570		PMI1, MEE31	PHOSPHOMANNOSE ISOMERASE 1, MA...		Lus10017603 [exp]	1.0	0.8199
AT4G19840		AtPP2A-1, ATPP2...	phloem protein 2-A1 (.1)		Lus10040602 [exp]	6.5	0.7862
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Lus10040508 [exp]	6.7	0.7838
AT5G24860		ATFPF1, FPF1	ARABIDOPSIS FLOWERING PROMOTIN...		Lus10000506 [exp]	7.3	0.8183
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10012959 [exp]	7.5	0.7845
AT1G18070			Translation elongation factor ...		Lus10009038 [exp]	7.9	0.7304
AT1G77290			Glutathione S-transferase fami...		Lus10042756 [exp]	16.7	0.7874
AT1G54340		ICDH	isocitrate dehydrogenase (.1)		Lus10010431 [exp]	21.3	0.7802
AT5G38050			RNA polymerase II transcriptio...		Lus10004072 [exp]	22.3	0.6902
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10013012 [exp]	22.8	0.7888

Compare expression of checked genes

Lus10027367 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.