Plant FIBer expression Database

Lus10027368 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G12860 713 / 0 DIT1 dicarboxylate transporter 1 (.1.2)
AT5G64290 402 / 2e-134 DCT, DIT2.1 dicarboxylate transport 2.1 (.1)
AT5G64280 354 / 8e-116 DIT2.2 dicarboxylate transporter 2.2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002560
[exp]
887 / 0 AT5G12860 841 / 0.0 dicarboxylate transporter 1 (.1.2)
Lus10003967
[exp]
401 / 7e-134 AT5G64290 842 / 0.0 dicarboxylate transport 2.1 (.1)
Lus10023779
[exp]
181 / 2e-52 AT5G64290 326 / 1e-108 dicarboxylate transport 2.1 (.1)
Lus10023778
[exp]
127 / 2e-34 AT5G64290 256 / 7e-84 dicarboxylate transport 2.1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G258600
[exp]
737 / 0 AT5G12860 777 / 0.0 dicarboxylate transporter 1 (.1.2)
Potri.009G053800
[exp]
729 / 0 AT5G12860 801 / 0.0 dicarboxylate transporter 1 (.1.2)
Potri.017G050500
[exp]
383 / 8e-127 AT5G64290 707 / 0.0 dicarboxylate transport 2.1 (.1)
Potri.001G310600
[exp]
353 / 3e-115 AT5G64290 652 / 0.0 dicarboxylate transport 2.1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0182 IT PF00939 Na_sulph_symp Sodium:sulfate symporter transmembrane region
Representative CDS sequence
>Lus10027368 pacid=23145455 polypeptide=Lus10027368 locus=Lus10027368.g ID=Lus10027368.BGIv1.0 annot-version=v1.0
ATGGCGTCCCTAGCTTTCACCTCTTCGTGCTCCGCATTCAATTCCCTTCCTTCGCTAAAATCCCACCGCCCTCTTTCCTTCTCCTCCCCTCTCAGATCCA
CCGCCGCCGCTACCAGACTCTCCTCCTCGTCCACCTCCTCTGCCGCTGGATTCTGTCTCCGTCCACTCCTCAAACACGATAATCACCGCACTTTCAAAAT
CCGAGCATCTGCCGACTCTTCTCCGCCCGCCGCCGTTGCCCCCCCTCCGCCACCGCCGCAACCATGGCAAGGGGCGGCGATGAAGCCGCTCGTAGCCTCT
ATCGCGATTGGAGTCGCGATCTGGAACGTTCCAGTCCCTGCCGGAGTCACCAAGCAAGCATGGCAGCTACTCGCGATCTTTCTGGCAACGATCGTCGGAA
TCATCACCCAACCTCTCCCCTTAGGAGCTGTAGCATTAATGGGATTAGGAGCTTCGGTACTAACAAAGACCCTGCCTTTCGCCGCTGCCTTCTCTGCCTT
CGGCGATCCGATCCCTTGGCTTATTGCGCTAGCCTTCTTCTTCGCCCGGGGATTCATCAAGACCGGATTAGGTAACCGGATCGCTTACCAGTTCGTATCT
CTATTCGGATCCTCTTCCCTAGGGTTAGGCTACAGTTTGGTCTTCAGCGAGGCCTTGCTTGCTCCGGCTATCCCGTCCGTCTCGGCTCGAGCTGGAGGGA
TCTTCTTGCCCCTAGTGAAATCTCTCTGCGTCGCCTGCGGCAGCAACGCCGGAGACGGCACGGAGCACAAGCTCGGGTCTTGGCTGATGTTGACTTGCTT
CCAGACGTCTTGTATATCGTCGGCGATGTTCTTGACTGCCATGGCGGCTAATCCTCTGAGCGTCAACTTGACGATGAACACTATAAACCAAACGTTTGGG
TGGACTGATTGGGCCATGGCTGCCTTTGTCCCTGGATTGGTTTCGTTGCTCGTTGTTCCTCTGATTTTGTACATTATCTATCCGCCGTCGGTGAAGAGCA
GCCCCGATGCTCCTAAACTGGCTAAGGAGAAGCTCGCCAACATGGGTCCGATGACTAAGAATGAAATCATCATGGCCGGAACTCTGCTTCTTACGGTTGG
GCTCTGGATTTTCGGAGGGATGTTGAACGTTGATGCCGTCACTGCTGCCATTCTTGGGTTGTCAATCCTCCTTGTATCCGGTGTGGTGACATGGAAAGAG
TGCTTAGCTGAATCGGTTGCTTGGGATACACTTACATGGTTTGCAGCCCTTATCGCCATGGCAGGGTACCTCAACAAGTATGGTCTCATCTCCTGGTTCA
GTGAAACCGTCGTCAAGGTTGTAGGTGGACTAGGCCTATCATGGCAGGCATCATTCGGGATCTTGGTCCTCCTCTACTTCTACTCCCACTACTTCTTCGC
CAGTGGTGCAGCCCACATTGGAGCTATGTTCACTGCATTCTTATCTGTGGCCAGCGCACTAGGGACGCCGCCTTACATCGGAGCCTTGGTGCTCTCTTTC
CTCTCCAACCTAATGGGCGGTCTCACACACTACGGGATAGGTTCGGCCCCCGTGTTCTACGGTGCTGGCTATGTCCCTCTTGCGAAATGGTGGGGCTACG
GATTCGTCATCTCAATCGTCAACCTTTCAATCTGGCTAGGAATTGGTGGCTTCTGGTGGAAATTCCTTGGCCTGTGGTAA
AA sequence
>Lus10027368 pacid=23145455 polypeptide=Lus10027368 locus=Lus10027368.g ID=Lus10027368.BGIv1.0 annot-version=v1.0
MASLAFTSSCSAFNSLPSLKSHRPLSFSSPLRSTAAATRLSSSSTSSAAGFCLRPLLKHDNHRTFKIRASADSSPPAAVAPPPPPPQPWQGAAMKPLVAS
IAIGVAIWNVPVPAGVTKQAWQLLAIFLATIVGIITQPLPLGAVALMGLGASVLTKTLPFAAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVS
LFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPLVKSLCVACGSNAGDGTEHKLGSWLMLTCFQTSCISSAMFLTAMAANPLSVNLTMNTINQTFG
WTDWAMAAFVPGLVSLLVVPLILYIIYPPSVKSSPDAPKLAKEKLANMGPMTKNEIIMAGTLLLTVGLWIFGGMLNVDAVTAAILGLSILLVSGVVTWKE
CLAESVAWDTLTWFAALIAMAGYLNKYGLISWFSETVVKVVGGLGLSWQASFGILVLLYFYSHYFFASGAAHIGAMFTAFLSVASALGTPPYIGALVLSF
LSNLMGGLTHYGIGSAPVFYGAGYVPLAKWWGYGFVISIVNLSIWLGIGGFWWKFLGLW

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G12860 DIT1 dicarboxylate transporter 1 (.... Lus10027368
[exp]
0 1
AT5G12860 DIT1 dicarboxylate transporter 1 (.... Lus10002560
[exp]
1.0 0.8964
AT5G64290 DCT, DIT2.1 dicarboxylate transport 2.1 (.... Lus10023779
[exp]
1.4 0.8794
AT1G71090 Auxin efflux carrier family pr... Lus10004059
[exp]
1.7 0.8761
AT4G23900 Nucleoside diphosphate kinase ... Lus10003878
[exp]
2.2 0.8405
AT2G36885 unknown protein Lus10026542
[exp]
2.4 0.8337
AT3G02580 BUL1, DWF7, STE... DWARF 7, BOULE 1, sterol 1 (.1... Lus10028498
[exp]
4.5 0.8470
AT2G36885 unknown protein Lus10013829
[exp]
12.2 0.8114
AT5G67360 ARA12 Subtilase family protein (.1) Lus10014853
[exp]
14.3 0.8054
AT3G11170 AtFAD7, FADD, F... FATTY ACID DESATURASE D, fatty... Lus10018245
[exp]
14.4 0.8054
AT1G01300 Eukaryotic aspartyl protease f... Lus10030246
[exp]
15.0 0.8217

Lus10027368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.