Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50920 936 / 0 Nucleolar GTP-binding protein (.1) AT1G10300 821 / 0 Nucleolar GTP-binding protein (.1) AT1G80770 130 / 3e-32 PDE318 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G23860 86 / 1e-18 GTP-binding protein-related (.1) AT4G39520 52 / 9e-07 GTP-binding protein-related (.1) AT1G17470 50 / 3e-06 ATDRG1 developmentally regulated G-protein 1 (.1.2) AT1G72660 50 / 3e-06 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT1G07615 48 / 2e-05 GTP-binding protein Obg/CgtA (.1) AT1G78010 47 / 4e-05 tRNA modification GTPase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002558 [exp] 1167 / 0 AT1G50920 1039 / 0.0 Nucleolar GTP-binding protein (.1) Lus10038748 [exp] 938 / 0 AT1G50920 940 / 0.0 Nucleolar GTP-binding protein (.1) Lus10007959 [exp] 514 / 2e-180 AT1G50920 498 / 2e-174 Nucleolar GTP-binding protein (.1) Lus10039110 [exp] 496 / 6e-173 AT1G50920 489 / 1e-170 Nucleolar GTP-binding protein (.1) Lus10007958 [exp] 286 / 1e-90 AT1G50920 322 / 7e-105 Nucleolar GTP-binding protein (.1) Lus10019508 [exp] 127 / 4e-30 AT1G80770 560 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043354 [exp] 125 / 2e-29 AT1G80770 550 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10005800 [exp] 51 / 2e-06 AT4G39520 682 / 0.0 GTP-binding protein-related (.1) Lus10006801 [exp] 51 / 2e-06 AT4G39520 655 / 0.0 GTP-binding protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G054000 [exp] 1014 / 0 AT1G50920 1048 / 0.0 Nucleolar GTP-binding protein (.1) Potri.001G258900 [exp] 1004 / 0 AT1G50920 999 / 0.0 Nucleolar GTP-binding protein (.1) Potri.002G134900 [exp] 129 / 5e-32 AT1G80770 576 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G080900 [exp] 52 / 7e-07 AT4G39520 647 / 0.0 GTP-binding protein-related (.1) Potri.001G239600 [exp] 52 / 8e-07 AT1G07615 511 / 3e-178 GTP-binding protein Obg/CgtA (.1) Potri.001G170300 [exp] 49 / 6e-06 AT1G72660 677 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.003G063500 [exp] 49 / 8e-06 AT1G72660 678 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF02421 [flax] [poplar] FeoB_N Ferrous iron transport protein B CL0023 [flax] [poplar] PF08155 [flax] [poplar] NOGCT NOGCT (NUC087) domain CL0023 [flax] [poplar] P-loop_NTPase PF06858 [flax] [poplar] NOG1 Nucleolar GTP-binding protein 1 (NOG1)
Representative CDS sequence Show only first row Show all	>Lus10027370 pacid=23145465 polypeptide=Lus10027370 locus=Lus10027370.g ID=Lus10027370.BGIv1.0 annot-version=v1.0 ATGGTTGAGTATAATTTCAAGAAGATAACGATGGTCCCTACTGGGAAGGATTTCGTTGATATAATTCTCTCTCGAACCCAAAGGCAGACGCCTACAGTTG TCCACAAGGGATATGCGATCAATCGCCTTCGCCAGTTCTACATGCGTAAGGTGAAGTACACCCAGACGAATTTCCATGAGAAGCTCTCTACAATCATCGA CGACTTCCCTCGTTTGGACGCCATTCATCCTTTCTATGGAGACCTTCTTCACGTCCTCTACAACAAAGATCATTACAAGCTCGCTCTTGGCCAGATAAAC AATGCCAGGAATCAAATTAGCAGGATTGCCAAGGACTATCTGAAGCTGTTGAAGTATGGTGACTCCTTATACAGGTGCAAGTCCCTGAAGGTTGCTGCAC TTGGCCGGATGTGTACTGTAATCAAGAGGACTGGACCTAGTTTGTCTTATCTGGAACAGGTCAGGCAGCACATGGCTAGGCTTCCTTCTATTGATCCGAA TACTCGGACGATCTTGATTTGTGGGTATCCGAATGTGGGAAAGAGCTCCTTCATGAACAAGATCACCAAGGCTGATGTGGACGTCCAGTCCTATGCTTTC ACTACCAAGTCGCTGTTTGTTGGCCACACGGATTACAAGTACTTGAGGTATCAGGTGATTGATACGCCTGGAATCTTGGACAGGCCCTTTGAAGATCGAA ACATCATCGAGATGTGCAGCATTACAGCTCTGGCTCATTTGCGAGCTGCTGTTTTGTTCTTCTTGGACCTCTCGGGCTCGTGTGGCTACACCATTGCCCA ACAGGCAGCTTTATTTAATAGCATCAAATCACTGTTCATGAACAAGCCTTTGACCATCGTCTGCAACAAAGCTGACTTGCAGTCACTAGAAGGGTTAAGT GAGGAAGACAGGAAGCTGGTCATGGATATGAAAGCTGAAGCATTCAAGACTCTTGTTGGGCAAGGAGGTGAGCCTGCTGATGATTCGGATTTGCTTTTGA CCATGAGCACTCTGACCGAGGAAGGGGTTATGGCTGTAAAGAATGCAGCTTGTGAAAGGCTGCTGGATCAGAGGGTTGAAGTGAAGATGAAATCGAAGAA GATTAACGATTTTAAGAATCGGTTTCATGTGGCTATGCCAAAGCCACGCGACCAAAAGGAAAGGTCGGTTTGTATTCCACAAGCAGTTTTGGAAGCTCAA AAGGAAGAGGCGGAGCAGAAGGAGAAGCGAAAAACCGAAAAAGATTTGGAAGAGGAGAATGGCGGTGCTGGTGTTTATTCGGCCAGCTTGAGGAAGCACC ACATTTTAGCAAACGAGGAATGGAAAGAAGATGTATTGCCCGAGTTCCTTGACGGACACAATGTCTACGACTTTGTTGATCCCGATATCTTGTACAGGCT CGAGGAGCTGGAACGTGAGGAAGGAATTCGACAAGCTGAAGCAGAAGGTGAGGAGTTTGAAATTGACGGGGAAGAGTTGACACCAGAAGAGAAGGAAGCT CTGGCGAGAATCAGGAAGAAGAAAGCCTTGCTTATCCAGGAACATAGGATAAAGAAGAGCACTGCTGAAAGCAGGCCTACTGTTGCTCGAAAATTCAACA AGGATAGGAAGTTCACATCTCAGAGATTCGGCAGGCAGATGTCGAGTGTGGGAATTGATCCTTCACGAGCTATTGAGCGGTCTCGTAGTAGGTCTGTTGT TAGGGTAGCGCGCAAAAGAGAAAGGTCTGTTGGTAATGACGGCGATGATGCTATGGATGTTGATGGTTCAAACAAGAAGCTGCGTTTGAGATCAAGATCG AGCTCTAGAATGACTCGTCCTATAACTGATGTTGTGCCTGGAGATGGATACAAGGACTCTGCTCAGAAGAGCAAGGCAATTACGATTGCAAGGAATGCTG TTAAGAAGAGGAACAAGAATGCTCGTCGTGGTGAGGCAGATAGAGTCATCCCCACTCTCAGGCCTAAGCATCTATTTTCCGGAAAACGCGGGATGGGGAA AACAGATAGACGTTAA
AA sequence Show only first row Show all	>Lus10027370 pacid=23145465 polypeptide=Lus10027370 locus=Lus10027370.g ID=Lus10027370.BGIv1.0 annot-version=v1.0 MVEYNFKKITMVPTGKDFVDIILSRTQRQTPTVVHKGYAINRLRQFYMRKVKYTQTNFHEKLSTIIDDFPRLDAIHPFYGDLLHVLYNKDHYKLALGQIN NARNQISRIAKDYLKLLKYGDSLYRCKSLKVAALGRMCTVIKRTGPSLSYLEQVRQHMARLPSIDPNTRTILICGYPNVGKSSFMNKITKADVDVQSYAF TTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRAAVLFFLDLSGSCGYTIAQQAALFNSIKSLFMNKPLTIVCNKADLQSLEGLS EEDRKLVMDMKAEAFKTLVGQGGEPADDSDLLLTMSTLTEEGVMAVKNAACERLLDQRVEVKMKSKKINDFKNRFHVAMPKPRDQKERSVCIPQAVLEAQ KEEAEQKEKRKTEKDLEEENGGAGVYSASLRKHHILANEEWKEDVLPEFLDGHNVYDFVDPDILYRLEELEREEGIRQAEAEGEEFEIDGEELTPEEKEA LARIRKKKALLIQEHRIKKSTAESRPTVARKFNKDRKFTSQRFGRQMSSVGIDPSRAIERSRSRSVVRVARKRERSVGNDGDDAMDVDGSNKKLRLRSRS SSRMTRPITDVVPGDGYKDSAQKSKAITIARNAVKKRNKNARRGEADRVIPTLRPKHLFSGKRGMGKTDRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50920			Nucleolar GTP-binding protein ...		Lus10027370 [exp]	0	1
AT3G56150		ATTIF3C1, ATEIF...	eukaryotic translation initiat...		Lus10039984 [exp]	1.0	0.8968
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10009578 [exp]	4.2	0.8924
AT5G18380			Ribosomal protein S5 domain 2-...		Lus10012599 [exp]	6.9	0.8496
AT3G01160			unknown protein		Lus10041866 [exp]	7.2	0.8114
AT1G73080		ATPEPR1, PEPR1	PEP1 receptor 1 (.1)		Lus10039030 [exp]	11.6	0.7577
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10036947 [exp]	13.0	0.7502
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10032176 [exp]	14.1	0.8399
AT1G60770			Tetratricopeptide repeat (TPR)...		Lus10013047 [exp]	14.8	0.7980
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10021844 [exp]	16.7	0.7983
AT2G37270		ATRPS5B	ribosomal protein 5B (.1.2)		Lus10013381 [exp]	17.5	0.8265

Compare expression of checked genes

Lus10027370 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.