Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12080 862 / 0 EMB2738 embryo defective 2738, GTP-binding family protein (.1.2) AT5G39960 198 / 5e-55 GTP binding;GTP binding (.1) AT1G78010 84 / 7e-17 tRNA modification GTPase, putative (.1) AT5G66470 63 / 4e-10 RNA binding;GTP binding (.1) AT1G52980 52 / 8e-07 AtNug2 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) AT1G80770 45 / 0.0002 PDE318 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002557 [exp] 1136 / 0 AT3G12080 869 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10006309 [exp] 72 / 8e-13 AT1G78010 669 / 0.0 tRNA modification GTPase, putative (.1) Lus10029578 [exp] 69 / 6e-12 AT1G78010 677 / 0.0 tRNA modification GTPase, putative (.1) Lus10014289 [exp] 61 / 1e-09 AT5G66470 587 / 0.0 RNA binding;GTP binding (.1) Lus10033794 [exp] 59 / 2e-09 AT5G39960 258 / 5e-83 GTP binding;GTP binding (.1) Lus10025995 [exp] 60 / 4e-09 AT5G66460 577 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10014634 [exp] 158 / 2e-07 AT5G39960 634 / 0.0 GTP binding;GTP binding (.1) Lus10014672 [exp] 48 / 2e-05 AT4G02790 414 / 8e-142 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10006927 [exp] 47 / 3e-05 AT4G02790 462 / 2e-164 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G054200 [exp] 882 / 0 AT3G12080 813 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Potri.004G230600 [exp] 210 / 4e-59 AT5G39960 787 / 0.0 GTP binding;GTP binding (.1) Potri.002G092600 [exp] 71 / 1e-12 AT1G78010 688 / 0.0 tRNA modification GTPase, putative (.1) Potri.007G021900 [exp] 66 / 3e-11 AT5G66470 535 / 0.0 RNA binding;GTP binding (.1) Potri.005G209900 [exp] 50 / 4e-06 AT4G02790 476 / 5e-169 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Potri.001G402500 [exp] 50 / 5e-06 AT1G52980 811 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Potri.002G134900 [exp] 44 / 0.0003 AT1G80770 576 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Lus10027371 pacid=23145370 polypeptide=Lus10027371 locus=Lus10027371.g ID=Lus10027371.BGIv1.0 annot-version=v1.0 ATGTCAACCGCCATTGCTACGGCAACCTTATTCTCTGTTAAACCCACCTCCATTTCCTCACAATTCAGCAAGATTTCCCTTCCCTTTACCTCCCTTTCAT TTCTCCCAGCCGTCTCATCCACTAAAGCATGCTTGTTTCGTCCTCCCCCATTCCTATCCACTTCTATCTCCTGTAAATCCTTCCTAGACACAGACCAAGA AGAAGAAGAAGATGAAGAACTTGAGCTGGAGGTGGAACTTGGCGATGAGTTCGACGATGAGATTGAGGAGATTGACTTCGATGAGCTTGAACATGAGGCC AAAGTTGCAGTTAGGGAATACTCGTCTTCTTTGTCCAAGGAATTGACAATCGATGACGAGACTGATACGAAGAAGGATTCCAGGAAGCAGAGGAGGAAGA AACTCACTGTTAAAGAGATTCCAGATCATCTTCTTCCAAGGGTTGCAATTGTTGGAAGGCCAAATGTTGGGAAATCGGCATTGTTTAACCGCCTTGTTGG GGAGAACAAGGCTATAGTGGTGGATGAGCCTGGGGTTACTCGTGATCGTCTATATGGTAGATCGTTTTGGGGTGACCATGAATTCATGGTGGTGGATACT GGAGGTGTCATCACTTTGTCAAAATCGAAAGTTGAAGTTATGGAGGAGCTCGCTGTAACAACGACCATTGGCATGGAAGGGATCCCTCTCGCCACTAGGG AAGCTGCAATTGCTAAGATGCCCTCTATGATTGAGAGGCAAGCTACTGCAGCTGTGGAAGAAGCTTCTGCCATCATATTCCTCGTCGATGGACAGGCAGG TCTAACAGCAGCTGATGTGGAGATAGCTGACTGGCTACGCAAGTATTACTCGCACAAGTTCGTCATCCTTGCAGTGAATAAGTGTGAATCTCCTCGTAAA GGACTGATGCAAGTTTCAGACTTTTGGACATTGGGATTCTCACCGATCCCTATATCTGCTATATCGGGAACTGGAACTGGGGAGCTTCTGAACCTTGTAT GTTCAGAAATTGCTAAACCAAAGGCTTCAGAAGATCCAGATGAAGAAGAAGAGAAAGAAGATTATGTACCTTCAATATCAATCGTTGGCCGACCAAATGT TGGCAAAAGCAGCATCCTAAATGCACTGGTTGGAGAGGATAGAACAATAGTCAGCCCTGTCAGTGGCACTACTCGTGATGCTATTGATACAGAATTTACA GGACCAGATGGCCAGAAGTTCCGGCTAATTGATACTGCTGGAATCAGGAAAAGGACTGCAGTAGCTTCTGCAGGTAGCACAACCGAGGCTTTATCAGTGA ATCGTGCATTTCGAGCAATTCGACGTTCTGATGTGGTTGCTCTTGTGATTGAGGCTATGGCGTGCATCACAGAACAGGATTTCAAAATTGCTGAAAGAAT AGAGAAGGAAGGGAAAGGGTGCCTAATTGTTGTGAACAAGTGGGACACAATACCAAACAAAAACCAGCAGACTGCATTGCACTATGAAGAAGATGTAAGA GAGAAGCTTCGCCTTCTTCAATGGGCTCCCATCGTTTATGCCACTGCAATTTCCGGTCACAGTGTCGACAGGGTCATTGTTGCAGCTAGTGAAGTCGAAA AGGAGCGGTCCAGGAGGCTTAGTACTGCCACATTGAATCAAGTGGTACAAGAAGGTCTAGCCTTTAAGTCGCCTCCGAGGACACGAGGTGGCAAGAGAGG CCGCGTCTACTACTGTACTCAGGCAGCAATCAGGCCACCTACGTTTGTGTTCTTTGTAAATGACTCGAACCTCTTCCCTGAGACGTACCGAAGGTACATG GAGAAGCAACTCCGTGCTAATGCAGGATTTCCTGGAACTCCAATACGGTTACTGTGGCGCAGCAGAAAGAAATCAGGAAGACTGGAAGGGAAAGGATCAG CAACAGCAGGAGGAGGAGGAGGAGCAAGAGCTAGACTGACACTGAAATCAAGTGGCAGAAAGTTGGCTTCAATATATCCATGA
AA sequence Show only first row Show all	>Lus10027371 pacid=23145370 polypeptide=Lus10027371 locus=Lus10027371.g ID=Lus10027371.BGIv1.0 annot-version=v1.0 MSTAIATATLFSVKPTSISSQFSKISLPFTSLSFLPAVSSTKACLFRPPPFLSTSISCKSFLDTDQEEEEDEELELEVELGDEFDDEIEEIDFDELEHEA KVAVREYSSSLSKELTIDDETDTKKDSRKQRRKKLTVKEIPDHLLPRVAIVGRPNVGKSALFNRLVGENKAIVVDEPGVTRDRLYGRSFWGDHEFMVVDT GGVITLSKSKVEVMEELAVTTTIGMEGIPLATREAAIAKMPSMIERQATAAVEEASAIIFLVDGQAGLTAADVEIADWLRKYYSHKFVILAVNKCESPRK GLMQVSDFWTLGFSPIPISAISGTGTGELLNLVCSEIAKPKASEDPDEEEEKEDYVPSISIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFT GPDGQKFRLIDTAGIRKRTAVASAGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDFKIAERIEKEGKGCLIVVNKWDTIPNKNQQTALHYEEDVR EKLRLLQWAPIVYATAISGHSVDRVIVAASEVEKERSRRLSTATLNQVVQEGLAFKSPPRTRGGKRGRVYYCTQAAIRPPTFVFFVNDSNLFPETYRRYM EKQLRANAGFPGTPIRLLWRSRKKSGRLEGKGSATAGGGGGARARLTLKSSGRKLASIYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10027371 [exp]	0	1
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10024297 [exp]	1.7	0.9567
AT4G18130		PHYE	phytochrome E (.1)		Lus10004592 [exp]	2.4	0.9489
AT5G23310		FSD3	Fe superoxide dismutase 3 (.1)		Lus10010174 [exp]	2.4	0.9497
AT3G62030		CYP20-3, ROC4	cyclophilin 20-3, rotamase CYP...		Lus10038015 [exp]	3.2	0.9377
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10010769 [exp]	3.5	0.9386
AT4G12970		EPFL9, STOMAGEN	stomagen (.1)		Lus10009589 [exp]	5.1	0.9238
AT5G64050		ATERS, ERS, OVA...	OVULE ABORTION 3, glutamate tR...		Lus10022659 [exp]	5.3	0.9420
AT3G21300			RNA methyltransferase family p...		Lus10009743 [exp]	6.2	0.9271
AT1G26230		Cpn60beta4	chaperonin-60beta4, TCP-1/cpn6...		Lus10030917 [exp]	6.6	0.9374
AT1G75010		ARC3	ACCUMULATION AND REPLICATION O...		Lus10031930 [exp]	7.9	0.9204

Compare expression of checked genes

Lus10027371 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.