Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36250 328 / 5e-109 ALDH3F1 aldehyde dehydrogenase 3F1 (.1) AT1G44170 265 / 1e-84 ALDH4, ALDH3H1 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) AT4G34240 239 / 5e-74 ALDH3I1 aldehyde dehydrogenase 3I1 (.1.2) AT1G79440 87 / 1e-18 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT3G66658 82 / 1e-16 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT3G48170 56 / 2e-08 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT1G23800 56 / 3e-08 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT3G48000 53 / 2e-07 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT3G24503 47 / 2e-05 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002557 [exp] 579 / 0 AT3G12080 869 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10031280 [exp] 466 / 2e-163 AT4G36250 555 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10031849 [exp] 461 / 3e-161 AT4G36250 550 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10041806 [exp] 297 / 5e-97 AT4G36250 640 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10028357 [exp] 291 / 1e-94 AT4G36250 635 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10029684 [exp] 257 / 3e-81 AT1G44170 742 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10015688 [exp] 249 / 7e-78 AT4G34240 674 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Lus10025681 [exp] 232 / 1e-71 AT1G44170 743 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10018153 [exp] 229 / 1e-70 AT1G44170 734 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G259100 [exp] 449 / 2e-156 AT4G36250 556 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.007G017100 [exp] 350 / 1e-117 AT4G36250 635 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.002G081800 [exp] 256 / 4e-81 AT1G44170 731 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Potri.005G179300 [exp] 255 / 8e-81 AT1G44170 736 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Potri.001G412900 [exp] 255 / 5e-80 AT4G34240 678 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.005G069800 [exp] 253 / 7e-79 AT4G34240 626 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.008G106000 [exp] 70 / 6e-13 AT3G66658 1049 / 0.0 aldehyde dehydrogenase 22A1 (.1.2) Potri.010G174000 [exp] 68 / 2e-12 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.018G075000 [exp] 56 / 2e-08 AT3G24503 751 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Potri.015G074100 [exp] 51 / 8e-07 AT3G48000 885 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10027372 pacid=23145406 polypeptide=Lus10027372 locus=Lus10027372.g ID=Lus10027372.BGIv1.0 annot-version=v1.0 ATGGATTCTTCTTCAGCTGTTTCATTGATGGAGAAGGATTTGAAAGGATTGGAAAGTGAGTTGGAAGGGATGAGAGATTACTTCAGAAATGGGAAGACTA AAGATGGAGAATGGAGGAAGGTGCAGCTTAAAGGGTTGCTTTCTTTCCTAAAAGAAAAAGAGACAGAGATCTTTCAGGCATTGATGGATGACTTGGGAAA GTCTGATGTTGAAGCTTATAGAGATGAGGTAGGGACATTGGTCAAGTCTGTGAATTTTGCTTTGAAAGGGTTGAAGGAGTGGATGTCAAGAGTGGCATTG GAACCATTGATTGGTTCAATAGCAGCAGGAAACACAATGGTTTTAAAGCCTTCTGAACTTGCTCCTGCATCTTCTTCTCTTCTGGCCAATGTCCTCAGTG GGACAAAATCTTCTTCACCGGTAAATAAAGAGATTTCAAGTACCAGGAGTGCAAGAGTAGGAAGGCTAGTTATGTCAGCAGCTGTGGAACATCTAACACC AGTTGTTCTTGAGCTGGGAGGCAAGTGCCCTTCACTTCTTGATTCCCTATCTTCATGGGAAATGAAGGTGGCTGTGAATCGAATAGTTGTGTCGAAGTTC GGTGCTTGTGGGGGTCAAGCCTGCATAGCAGTTGATTATGTTCTGGTGGAGAAGAATATGAAATGCTCAGACAAAAAAATGTTTGGAGAAAACCCTAGAG ACTCCAGTTCCTTGACAAAAATAATAAACAGGCAACACTTCTCAAGATTGAACAGCCTTCTCAATGATCCAGCCGTCAGAGCTTCTGTTGTCTATGGCGG TTCCATGAACGAAGAACATCTATATATTGAGCCAACTATACTGGTGGATCCACCACTCAACTCTGCAATCATGACAGAAGAATTGGAGAAGATTGAAGAC AGCATTAACTTCATAAACACAAGGCCAAAGCCACTAGCTTTATATGCATTCACCAAGAACAAGTCATTGAGCAAAAGGCTTCTCTCTGAAACATCATCAG GAAGCATAGTTTTCAATTATGCAATCTTACAATATGCAGCAGATACCTTGCCATTTGGAGGGATAGGGGAGAGTGGGATGGGGAAGTACCATGGGAAGTA CTCATTGAGACATTCAGCCATTACAAAGCCATAG
AA sequence Show only first row Show all	>Lus10027372 pacid=23145406 polypeptide=Lus10027372 locus=Lus10027372.g ID=Lus10027372.BGIv1.0 annot-version=v1.0 MDSSSAVSLMEKDLKGLESELEGMRDYFRNGKTKDGEWRKVQLKGLLSFLKEKETEIFQALMDDLGKSDVEAYRDEVGTLVKSVNFALKGLKEWMSRVAL EPLIGSIAAGNTMVLKPSELAPASSSLLANVLSGTKSSSPVNKEISSTRSARVGRLVMSAAVEHLTPVVLELGGKCPSLLDSLSSWEMKVAVNRIVVSKF GACGGQACIAVDYVLVEKNMKCSDKKMFGENPRDSSSLTKIINRQHFSRLNSLLNDPAVRASVVYGGSMNEEHLYIEPTILVDPPLNSAIMTEELEKIED SINFINTRPKPLALYAFTKNKSLSKRLLSETSSGSIVFNYAILQYAADTLPFGGIGESGMGKYHGKYSLRHSAITKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10027372 [exp]	0	1
AT5G41020	MYB		myb family transcription facto...		Lus10022932 [exp]	3.3	0.9482
AT5G10520		RBK1	ROP binding protein kinases 1 ...		Lus10002659 [exp]	4.2	0.9473
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10025832 [exp]	6.2	0.8933
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10039713 [exp]	6.5	0.9414
AT4G29035			Plant self-incompatibility pro...		Lus10022825 [exp]	7.2	0.9380
AT2G45650	MADS	AGL6	AGAMOUS-like 6 (.1)		Lus10015017 [exp]	7.4	0.9326
AT4G18770	MYB	ATMYB98	myb domain protein 98 (.1)		Lus10042111 [exp]	10.2	0.9248
AT3G54200			Late embryogenesis abundant (L...		Lus10035612 [exp]	10.2	0.8901
AT1G17960			Threonyl-tRNA synthetase (.1)		Lus10030644 [exp]	11.7	0.9247
					Lus10038154 [exp]	12.4	0.9135

Compare expression of checked genes

Lus10027372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.