Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19350 276 / 1e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G47500 217 / 1e-67 ATRBP47C' RNA-binding protein 47C' (.1) AT1G47490 213 / 2e-67 ATRBP47C RNA-binding protein 47C (.1.2) AT5G54900 214 / 5e-67 ATRBP45A RNA-binding protein 45A (.1) AT4G27000 210 / 3e-65 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G11650 206 / 1e-64 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G19130 207 / 9e-64 ATRBP47B RNA-binding protein 47B (.1) AT1G49600 206 / 4e-63 ATRBP47A RNA-binding protein 47A (.1) AT1G54080 85 / 2e-18 UBP1A oligouridylate-binding protein 1A (.1.2) AT3G14100 84 / 5e-18 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031844 [exp] 327 / 9e-111 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10031277 [exp] 327 / 1e-110 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10018345 [exp] 213 / 2e-66 AT1G11650 439 / 1e-153 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012070 [exp] 209 / 4e-65 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1) Lus10014029 [exp] 207 / 4e-65 AT3G19130 455 / 1e-160 RNA-binding protein 47B (.1) Lus10019889 [exp] 207 / 5e-65 AT3G19130 450 / 1e-158 RNA-binding protein 47B (.1) Lus10043106 [exp] 210 / 1e-64 AT4G27000 341 / 4e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10012071 [exp] 206 / 2e-64 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1) Lus10027911 [exp] 205 / 2e-64 AT1G49600 411 / 3e-143 RNA-binding protein 47A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G054400 [exp] 310 / 2e-104 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G105300 [exp] 223 / 4e-70 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.001G423400 [exp] 220 / 6e-69 AT4G27000 474 / 2e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G034600 [exp] 216 / 2e-67 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.004G143400 [exp] 216 / 5e-67 AT3G19130 480 / 2e-168 RNA-binding protein 47B (.1) Potri.011G138400 [exp] 214 / 9e-67 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G128100 [exp] 212 / 1e-65 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.004G017200 [exp] 207 / 5e-64 AT1G11650 423 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.007G028300 [exp] 79 / 1e-16 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G139300 [exp] 78 / 4e-16 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10027373 pacid=23145524 polypeptide=Lus10027373 locus=Lus10027373.g ID=Lus10027373.BGIv1.0 annot-version=v1.0 ATGCACAGAAGTGGCGGGTACCATCAACCCGCGACCCTAGTTGAAGTTAGGACTAGGATTGGCGCTTTACAGTACTGGGTCGATGAAAACAACCCAATTC CTGTTTTCCTCACACCAGCGAGGTATGAATTGGATGATCAAGCGGTTTCGGTGAAGATCATCCGTAACAAGTTGTTTGGACAGCCTGAGGGTTACAGATT TGTGGAGTTTGTTTCACATCAGGCGGCTGAGAGGGTTCTACAGACATATAATGGAGCCCAGATGCCTGGGAGTGAGCAACTATTCAGGCTGAACTCGGCT TCTTTCGGGATTGGAGAAAGGCGTCCTGATTCTGGGCCAGAGCATTCCATTTTCGTTGGCGATTTAGCTCCTGATGTTACTGACTATATCTTGCAAGAGA CGTTTAGGACTCAGTATCTATCTGTTAGAGGAGCTAAGGTAGTAACTGGTCCGAATACAGGGCGTTTGCAGGGATATGGTTTCGTTAAGTATGGTGATGA GAACGAACGGGACCGCGCCATGTCTGAAATGAATGGCGTTTATTGCTCAACTAGGCAGATGCGTATCAGTGCTGCAACACCGAAGAAGACCACTGGTTAT CAACAGCAATATGCTGCCGTTCCAAAAGCCGTATATCCAGCTCCTGCATATACAGCACCCATCCAGGAAGTTGCAACATCAGATAATGACCTAACAAATA CCACTTGGAGTGCCTATTATGGTTATGGACAAGGCTACGATGCTTATAGCTATGGAGCTGCACAGGTTCTATCGGCATATGCATATGCTGGTTATCTTCA GTATCGTCAACAGGGTGTTCAAGATATGACAGGTGCTGTTCCAATGATGGAACAGAGGGAAGAAATTTACGATCCCTTGGTGGCTCCCGATGTTGATAAA TAA
AA sequence Show only first row Show all	>Lus10027373 pacid=23145524 polypeptide=Lus10027373 locus=Lus10027373.g ID=Lus10027373.BGIv1.0 annot-version=v1.0 MHRSGGYHQPATLVEVRTRIGALQYWVDENNPIPVFLTPARYELDDQAVSVKIIRNKLFGQPEGYRFVEFVSHQAAERVLQTYNGAQMPGSEQLFRLNSA SFGIGERRPDSGPEHSIFVGDLAPDVTDYILQETFRTQYLSVRGAKVVTGPNTGRLQGYGFVKYGDENERDRAMSEMNGVYCSTRQMRISAATPKKTTGY QQQYAAVPKAVYPAPAYTAPIQEVATSDNDLTNTTWSAYYGYGQGYDAYSYGAAQVLSAYAYAGYLQYRQQGVQDMTGAVPMMEQREEIYDPLVAPDVDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10027373 [exp]	0	1
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10013578 [exp]	2.0	0.9248
AT1G05410			Protein of unknown function (D...		Lus10010550 [exp]	3.7	0.9122
AT2G30105			unknown protein		Lus10031291 [exp]	4.6	0.9220
AT5G55530			Calcium-dependent lipid-bindin...		Lus10016592 [exp]	8.9	0.9176
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10038952 [exp]	11.4	0.9291
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10008197 [exp]	15.0	0.9171
AT3G07440			unknown protein		Lus10009585 [exp]	23.3	0.8705
AT1G69550			disease resistance protein (TI...		Lus10001038 [exp]	23.5	0.9120
AT2G44270		ROL5	repressor of lrx1 (.1.2)		Lus10009739 [exp]	23.7	0.9093
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10036689 [exp]	24.7	0.8864

Compare expression of checked genes

Lus10027373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.