Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002555 [exp] 49 / 3e-06 ND 46 / 2e-05
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04554 [flax] [poplar] Extensin_2 Extensin-like region
Representative CDS sequence Show only first row Show all	>Lus10027376 pacid=23145565 polypeptide=Lus10027376 locus=Lus10027376.g ID=Lus10027376.BGIv1.0 annot-version=v1.0 ATGGCACAATATAGCAACAAGGGGTTGCTTTCTACATTGGCATTTTGCCTTATTGTAGCCTTTGTCACAATTACCAACGTGTCTGCTGCTGATACTTACA ACCCCTATGTTTATGCTTCTCCACCACCACCTCCCTATCACTACTCATCACCTCCTCCTCCCGTCAAGTCTCCTCCACCACCCTACCACTACTCATTGCC TCCTCCTCCCGTGAAATCTCCGCCGCCTCCATACCACTACTCGTCGCCTCCTCCTCCTAAGACATCTCCGCCGCCTCCATACCATTACTCGTCGCCACCT CCTCCTAAAAAGTCTCCCCCACCACCATACCATTACAGTTCTCCACCTCCTCCTAAGAAGTCTCCACCACCTCCATATCATTACTCGTCGCCTCCTCCTC TTAAAAAGTCTCCACCACCTCCATACCATTACAGTTCTCCTCCTCCTCCAGTGAAATCTCCACCGCCTCCATATCACTACTCGTCACCACCTCCTCCTAG GAAGTCTTCCCCACCACCATATCATTACTCATCTCCTCCTCTTCCAGTCAAATCTCCACCGCCTCCATATCACTACTCATCGCCACCTCCTCCTAAGAAG TCCCCCCCACCACCATATCATAACTCGTCTCCTCCTCCTCCAGTGAAGTCTCCACCACCTCCATACCACTACTCGTCACCACCTCCTCCTAAGAATTCTC CCCCACCACCATACCACTACTCGTCCCCTCTTCCTAAGAAGTCTCCTCCACCACCATACCACTACTCATCGCCTCCTCCTCCTAAGAAGTCTCCACCGCC TCCATACCACTACTCGTCACCTCCGCCTCCCAAGAATTCTCCCCCACCACCATACCACTACTCGTCGCCTCCTCCTCCGGTTAAGTCTCCCCCGCCACAA TACCACTACTCATCACCACCTCCTCCCAAGAGGTCTCCTCCGCTACCATATCACTACTTGTCACCACCTCCTCCCAAAAAGTCTTCTCCGCCACCATACC ATTACACATCACCTCCATCACCTAAGAAGTCACCACCTCCTCCATACTACTATGCGTCACCCCCACCTCCATCACACTATTAA
AA sequence Show only first row Show all	>Lus10027376 pacid=23145565 polypeptide=Lus10027376 locus=Lus10027376.g ID=Lus10027376.BGIv1.0 annot-version=v1.0 MAQYSNKGLLSTLAFCLIVAFVTITNVSAADTYNPYVYASPPPPPYHYSSPPPPVKSPPPPYHYSLPPPPVKSPPPPYHYSSPPPPKTSPPPPYHYSSPP PPKKSPPPPYHYSSPPPPKKSPPPPYHYSSPPPLKKSPPPPYHYSSPPPPVKSPPPPYHYSSPPPPRKSSPPPYHYSSPPLPVKSPPPPYHYSSPPPPKK SPPPPYHNSSPPPPVKSPPPPYHYSSPPPPKNSPPPPYHYSSPLPKKSPPPPYHYSSPPPPKKSPPPPYHYSSPPPPKNSPPPPYHYSSPPPPVKSPPPQ YHYSSPPPPKRSPPLPYHYLSPPPPKKSSPPPYHYTSPPSPKKSPPPPYYYASPPPPSHY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10027376 [exp]	0	1
AT2G48020			Major facilitator superfamily ...		Lus10008184 [exp]	1.0	0.9848
AT2G23770			protein kinase family protein ...		Lus10019661 [exp]	1.4	0.9847
					Lus10031841 [exp]	3.0	0.9832
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10037585 [exp]	3.9	0.9739
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Lus10004612 [exp]	3.9	0.9818
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021257 [exp]	4.5	0.9818
AT1G63810			unknown protein		Lus10014305 [exp]	4.7	0.9760
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Lus10021028 [exp]	4.9	0.9754
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10010885 [exp]	5.5	0.9765
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10014146 [exp]	7.9	0.9791

Compare expression of checked genes

Lus10027376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.