Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05160 93 / 6e-19 AMP-dependent synthetase and ligase family protein (.1) AT1G20480 92 / 1e-18 AMP-dependent synthetase and ligase family protein (.1) AT5G38120 90 / 5e-18 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 89 / 8e-18 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT5G63380 87 / 4e-17 AMP-dependent synthetase and ligase family protein (.1) AT1G20500 86 / 1e-16 AMP-dependent synthetase and ligase family protein (.1) AT1G65060 85 / 2e-16 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT3G21230 84 / 6e-16 4CL5 4-coumarate:CoA ligase 5 (.1) AT3G21240 81 / 4e-15 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT4G19010 79 / 1e-14 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002549 [exp] 1965 / 0 AT4G05160 74 / 5e-13 AMP-dependent synthetase and ligase family protein (.1) Lus10002550 [exp] 481 / 2e-158 ND / Lus10002535 [exp] 209 / 2e-56 AT1G20510 79 / 3e-15 OPC-8:0 CoA ligase1 (.1.2) Lus10007144 [exp] 102 / 4e-23 ND 47 / 7e-06 Lus10037934 [exp] 99 / 9e-21 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10012280 [exp] 97 / 9e-20 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10015998 [exp] 95 / 2e-19 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10036994 [exp] 92 / 1e-18 AT5G63380 516 / 4e-179 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 91 / 4e-18 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T085701 [exp] 2414 / 0 AT1G20480 91 / 3e-18 AMP-dependent synthetase and ligase family protein (.1) Potri.003G210600 [exp] 2410 / 0 AT1G20480 91 / 4e-18 AMP-dependent synthetase and ligase family protein (.1) Potri.003G210701 [exp] 2408 / 0 AT1G20480 91 / 3e-18 AMP-dependent synthetase and ligase family protein (.1) Potri.005G227800 [exp] 216 / 4e-59 AT3G21230 47 / 3e-05 4-coumarate:CoA ligase 5 (.1) Potri.005G248500 [exp] 106 / 3e-23 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.012G094800 [exp] 102 / 4e-22 AT5G63380 657 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G112800 [exp] 101 / 1e-21 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.002G012800 [exp] 101 / 1e-21 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.004G102000 [exp] 97 / 4e-20 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.010G230200 [exp] 95 / 1e-19 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00199 [flax] [poplar] Catalase Catalase CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme CL0314 [flax] [poplar] PP-binding PF00550 [flax] [poplar] PP-binding Phosphopantetheine attachment site
Representative CDS sequence Show only first row Show all	>Lus10027377 pacid=23145445 polypeptide=Lus10027377 locus=Lus10027377.g ID=Lus10027377.BGIv1.0 annot-version=v1.0 ATGCTTCCAGGAGATAACAAGGTTCCAGATTGTGAACCTCAACCTCAAGACTTGTGTTTCCTGCAATTTACATCAGGCTCTACAGGAGATGCTAAAGGTG TGATCATCACTCATGGTGGCCTCATTCACAATGTCAAGATGATGAGAAGAGTTTATAAGAGCACTTCAAATACTGTGTTAGTTAGCTGGCTTCCTCAATA CCATGATATGGGGCTAATTGGTGGACTTTTCACAGCTCTTGTTAGTGGTGGAACTGCTGTTTTATTCTCTCCATTGACTTTCATCAAGAATCCACTCCTC TGGCTCCAGACCATGACCAGATATAGAGCTACTCACAGTGCTGGCCCGAACTTTGCCTTCGAGTTGATGGTTCGAAGACTGGAAGCAAGTGACAAGACTC GAAGCTTCGATCTTTCTTCCATGGTTTTTCTGATGATTGCTGCTGAGCCAGTGAGACAGAAAACCCTGAAGAGATTCATTGAACTGACTCGTCCTTTCGG ACTTTCCCAAGAGGTGATGGCTCCTGGTTATGGTTTGGCAGAGAACTGTGTGTTTGTGTCATGTGCTTATGGTGAACGAAAACCCATCATGATTGACTGG CAAGGAAGAGTGTCTTGCGGGTATGTGAATCCGAATGACAAAGATATCGACATCAAAATTGTTGATCCTGAAAGTGGAGAAGAGCTGAAGGAATATGGAA CGGAAGGAGAGATATGGATTAGCAGCCCAAGTGCTGGAACTGGTTATTGGGGTAGGGAAGAACTAAGCCAGAAGACCTTCAAAAATGAACTGCTGAGCAA TCCTGGAAGAATGTACACAAGAACCGGAGACTTGGGCAGAATCATTGATGGAAGCTTATTCATAACTGGAAGAATCAAGGATCTTATCATTGTAGCTGGA AGGAACATTTACTCAGCTGATGTGGAGAAGACAGTTGAGAACTCATCCGATATCCTAAGACCAGGTTGTTGTGCTGTAATTGGAGTTCCAGAGGATGTCT TGTTGGCGGAAGGGATCTCAGTTTCTGATGGCTCTGCTGATCAAGTAGGCTTGGTGGTGATTGCAGAAGTCAGAGAGATGAAACAAGTTGATAAAGATGA CGTTGCAGAACAGATCAAAGCCCGGGTAGCCGAAGAACATGGTGTTGCAGTTGCTGCAGTCAAGCTAATCAAGCCAAGAACACTTAGCAAAACAACATCT GGAAAAATCAAGAGATTTGAGTGCCTCAAACAGTTCACAGAGGGGAGTCTGAGCGTTGTTCCAGACGCAGCTTTGTCAAAGAGAAAATCATTCAAGTCAA TAAGCAAAGGGGAAAAATCACCTCTTTCTCAGACTGTGAGTTCTGCTACATTGAGCAACAGGGAGATTGTGGATTTTCTGAAGAAGATTGTATCTGAGCA GACAGGAGTTCCAGTCAAGAGCATCTCCACCACTGAAAACTTAGTTTCTTATGGCATTGATTCAATCGGTGTCGTAAGAGCTGCTCAGAAACTTTCCGAC TTCCTTGGGGTACCAGTTGGAGCAGTAGACATCTTCTCAGCTACTTGCATTGCAGACCTGGCTAGCTTCTCTGAGAATCTCTTGATGAAATCTCAACCTC AGGGAGTTATAAACAACTCACAATCCTGCAGTTCAGATGCACATGTTGATTCTGCAGAGTTATTAATTGAAGTTTCAAAGACTCGCCAGATCTTCATATG GTTCTTCCAACTTCTTGCCATAGCTTATGTCTCTACCCTGCTGAGCTTTCCGGCTTACCTGTCCATCTCAGCCTTTACAAGCATTCTTCAAAATGCTAAC GTTCTGGTAGAGGGGGGACCCTGGTTATCATTTTCCATCTCTTTAGCTTTGGCCCCACTTGCTTGGATGCTCTGCATGGTTTCAACCTCCATTACCATTA CCTTATTTGGTAAGCCATTCTTACAACCAAACTATGTTCTAACTCCAGAAGTGTCCATCTGGTCGATAGATTTTGTCAAGTGGTGGGCTCTTTACAAAGT TCAAGAGACTTCTTCGAAAGTCCTTGCTGTTCATCTGAGAGGAACAGTGTTCCTGAACTATTGGTTTGAGATGATTGGAGCTCGGGTTGGGTCATCAGTT TTGCTTGACACAGTTGATATTACAGACCCATCTCTGGTCTCAATTGGAGATGGTGTTGTGATTTCTGAAGGAGCATTGATCCAAAGTCACGAGGTTAAGA ATGAAGTTCTGAGCTTTCTTCCAATCAAAATTGGGAGAAACTCTTCAATTGGTCCATATTCTGTACTCCAAAAGGGAAGTGTAGTGGGAGAACAAGTTGA TGTTCCTCCATTGCAGAAGGTTCAAAATGGTCTACCTGCATCCAAAACAAACAAGAAGGAAACAAAGCTTCAGCCGCAAAATTCATTGATGAATGCTATT GTCCACTTCATAGGTGTCTACACGGTCGGTCTCCTCAGCAGTTTTTCTGCAGCAATTGTATACTTACTGTACATTTGGTTGTCTCAAGAACAAGCATCCC TTCAATATTTCTCATTCTTCTGCATCTCTGGAGCTTTCCATTGGATTCCATTCACAATCATTGCTTACGCCACAATGCTCTCCAATCTCCATCCGTCAAG CGCAGTTGCCTTTGCAGTCTCACTCGCCGTTTCTTACCTAGTACATGGCTTGATCCTCAGCATTTTGACAGGCGTCGTCACCCATGTGCTTGCCGGTAGA GAGAGCAACCATTTGAACAGTTGGCTTCGCCATCGCCTCATTGTCTCATGCCACTTGAAGTTTGCCAAACTCCTTTCGGGAACTGAGGCCTTCTGCCTGT ATTTGCGCCTTTTGGGTGCGAAAATTGGGATACATTGTTCAATCAGAGCCATCAACGCAGTCTCCGATCCACAACTCATCCGGATCGGTAATGGTGTCCA TCTTGGCGACTTTAGCAGACTTGTTCCAGGGTACTATTCCTCAAGTGGGTACATTTCGAAAGCAGTCGAGGTACAAGATAATTCTGTGGTTGGAAGCCAA AGCATCATCCTACCAGGTGCTGTCATCCAGAACAATGTCATTCTTGGAGCTCTTTCCGTTGCTCCAACAAACTCCATACTCCAAAAGGGAGGTATTTACA TCGGATCTCAAGCTCCTATAATGATCAAGAACACAATGCACTCTCTAGATGACAGGATAGAAGAAATGGACACCAAATACAAAAAGATCATTGGCAACCT AGCAGCCAGTTTAGCTGCAACCACTCTAAAAGTTAAATCCAGGTACTTCCATCGAATTGGAGTGAGCGGAAAGGGCCACCTCAAGATATATGATGCCATC AAAGGACTGCCAGATCACAATATCTTCCAAAGTGGGAAGACTTACCCTGTCATTATCCGCCATAGCAACAGCTTGAGCTCTGATGATGATGCCAGGCTTG ATGCAAGAGGTGCAGCAATCAGAATACTTTCTTCTGATGATGAGGACAACTCTCAACCTAATTCGAAGCTCCTTGACTTGACACTGAAAACAGGAAATGC CTTCTACGCTCGTACAATTTCTGACTTTGCAACCTGGTTGGTATGTGGTCTTCCTGCCAGGGAAGTCTATGTGAAGAGAGCCCCTCATATCCGAGATGCA GTCTGGACATCTCTTCGAGACTCTAACTCTTACACTGAACACCATTACTACTCCAACTTCGTCCGCCTCTTGAGGTGCAAAGATGGACAAGAGATGTATG TCAGGTTTAAGCTAAGGCCAGCTGATGAAAACTTGGGGGAGGATGTTGGAAAAGTGGACCCCATCGGAATTCTTCCTCCTGAGACAGGTGCAATTCCAAG GGACCCAAGTGACACTCGTCCTTTGCTATTCTTGGCCCAAGACTTCCAACGCCGAGTCAATTCCTCTGGTGGAGTTCACTATATCTTCCAATTACAAGTA AGACCAGTTCCTGAAGATGAAGCAGGTCGTGAAGATGCAGTTGACTGCACAAAGCCATGGGACGTAACAGAGTTTCCAAACATCGACGTGGGTGAAATCA CAATCGATCAAAATCTCAGCAGTGAAGAATCAGAGTCGTTACAATTCAACCCTCACGTTCGGTGCAAAGATGTGGATGTGATTCGAGCCACATCTTCTAC ACAGAGCGCTTCCATCGACCATGGACGGTCATTGATCTACGAAATATGTCAGCATTTGAGAAACGGAGAGCCACTCCCGGAAGCATGGAGGATCTTCATT GAACAATCCGATGTTAAAGTAGACCTCTCCGGTTGCCAAATGGCAGCATCAATCGTGGAAAACAACAAAAAGGATTCAAAGAAGGTGACTTTAGCAAGAA CATGGTACCAAACCACGTGGGCGACTCTCGTTCAACCATTTCTACAAACCCTCGTCCCGCATTTCCTAATCGGCCTGATAATCTCCCTGCCTCTCAATTG GGCACTCTCCTTGAAAAACCCTCAACAACTCCATTACTTCCTCCCAATAATCTGGCTTTCTTCGGGATTTCTCTCAGCCATAGCATGCATCGTGGCGAAG TGGGTCCTCGTAGGAACCAAAAAGGAAGGAGAAACAGTATACTTATGGAGCATATCCGTATTCATGGACACAGTCTGGCAAGCTATCAGAACAATAACAG GAGACTACTTTGTGGAAATGGTATGCGGGTCGATTTGGTTCAATCTGTGGGTAAAGCTAATGGGGACGGAGGTTGAGTTGCATGAAGGAGCTTACATTGA CTCCATGGGAGCTACTCTGAATCCAGAGATGGTGGAGATTGAGAGAGGCGGGTGCATTGGGAAGGAAGCTCTGTTGTTCGGACACATCTATGAAGGTGAA GATGGAAAAGTGAAGTTTGGGAAGATTAGCGTGGGAGAAGGCGGGTATATTGGGAGCAGAGCGATCGCCATGCCTGGAGTGAGAATTGAGAGTGGTGGCA GCCTGGGTGCTCTGGCTCTGGCTATGAAGGAAGAAATTATTAGGTGTAGCTACTAA
AA sequence Show only first row Show all	>Lus10027377 pacid=23145445 polypeptide=Lus10027377 locus=Lus10027377.g ID=Lus10027377.BGIv1.0 annot-version=v1.0 MLPGDNKVPDCEPQPQDLCFLQFTSGSTGDAKGVIITHGGLIHNVKMMRRVYKSTSNTVLVSWLPQYHDMGLIGGLFTALVSGGTAVLFSPLTFIKNPLL WLQTMTRYRATHSAGPNFAFELMVRRLEASDKTRSFDLSSMVFLMIAAEPVRQKTLKRFIELTRPFGLSQEVMAPGYGLAENCVFVSCAYGERKPIMIDW QGRVSCGYVNPNDKDIDIKIVDPESGEELKEYGTEGEIWISSPSAGTGYWGREELSQKTFKNELLSNPGRMYTRTGDLGRIIDGSLFITGRIKDLIIVAG RNIYSADVEKTVENSSDILRPGCCAVIGVPEDVLLAEGISVSDGSADQVGLVVIAEVREMKQVDKDDVAEQIKARVAEEHGVAVAAVKLIKPRTLSKTTS GKIKRFECLKQFTEGSLSVVPDAALSKRKSFKSISKGEKSPLSQTVSSATLSNREIVDFLKKIVSEQTGVPVKSISTTENLVSYGIDSIGVVRAAQKLSD FLGVPVGAVDIFSATCIADLASFSENLLMKSQPQGVINNSQSCSSDAHVDSAELLIEVSKTRQIFIWFFQLLAIAYVSTLLSFPAYLSISAFTSILQNAN VLVEGGPWLSFSISLALAPLAWMLCMVSTSITITLFGKPFLQPNYVLTPEVSIWSIDFVKWWALYKVQETSSKVLAVHLRGTVFLNYWFEMIGARVGSSV LLDTVDITDPSLVSIGDGVVISEGALIQSHEVKNEVLSFLPIKIGRNSSIGPYSVLQKGSVVGEQVDVPPLQKVQNGLPASKTNKKETKLQPQNSLMNAI VHFIGVYTVGLLSSFSAAIVYLLYIWLSQEQASLQYFSFFCISGAFHWIPFTIIAYATMLSNLHPSSAVAFAVSLAVSYLVHGLILSILTGVVTHVLAGR ESNHLNSWLRHRLIVSCHLKFAKLLSGTEAFCLYLRLLGAKIGIHCSIRAINAVSDPQLIRIGNGVHLGDFSRLVPGYYSSSGYISKAVEVQDNSVVGSQ SIILPGAVIQNNVILGALSVAPTNSILQKGGIYIGSQAPIMIKNTMHSLDDRIEEMDTKYKKIIGNLAASLAATTLKVKSRYFHRIGVSGKGHLKIYDAI KGLPDHNIFQSGKTYPVIIRHSNSLSSDDDARLDARGAAIRILSSDDEDNSQPNSKLLDLTLKTGNAFYARTISDFATWLVCGLPAREVYVKRAPHIRDA VWTSLRDSNSYTEHHYYSNFVRLLRCKDGQEMYVRFKLRPADENLGEDVGKVDPIGILPPETGAIPRDPSDTRPLLFLAQDFQRRVNSSGGVHYIFQLQV RPVPEDEAGREDAVDCTKPWDVTEFPNIDVGEITIDQNLSSEESESLQFNPHVRCKDVDVIRATSSTQSASIDHGRSLIYEICQHLRNGEPLPEAWRIFI EQSDVKVDLSGCQMAASIVENNKKDSKKVTLARTWYQTTWATLVQPFLQTLVPHFLIGLIISLPLNWALSLKNPQQLHYFLPIIWLSSGFLSAIACIVAK WVLVGTKKEGETVYLWSISVFMDTVWQAIRTITGDYFVEMVCGSIWFNLWVKLMGTEVELHEGAYIDSMGATLNPEMVEIERGGCIGKEALLFGHIYEGE DGKVKFGKISVGEGGYIGSRAIAMPGVRIESGGSLGALALAMKEEIIRCSY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05160			AMP-dependent synthetase and l...		Lus10027377 [exp]	0	1
AT4G05160			AMP-dependent synthetase and l...		Lus10002549 [exp]	1.0	0.8509
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Lus10011172 [exp]	3.0	0.8138
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10020215 [exp]	4.9	0.8236
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Lus10027378 [exp]	6.7	0.7756
AT5G26670			Pectinacetylesterase family pr...		Lus10010084 [exp]	8.4	0.7903
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10022373 [exp]	11.1	0.8041
AT4G34135		UGT73B2	UDP-glucosyltransferase 73B2 (...		Lus10027880 [exp]	12.4	0.7744
AT1G22460			O-fucosyltransferase family pr...		Lus10008719 [exp]	14.5	0.7623
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Lus10003013 [exp]	15.2	0.7110
AT1G71900			Protein of unknown function (D...		Lus10019952 [exp]	16.9	0.7850

Compare expression of checked genes

Lus10027377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.